Evidence map›Paper›PMID 26711138›Full record

ArticleJournal of lipid research2016

Genetic association of long-chain acyl-CoA synthetase 1 variants with fasting glucose, diabetes, and subclinical atherosclerosis.

Ani Manichaikul, Xin-Qun Wang, Wei Zhao, Mary K Wojczynski, Kyle Siebenthall, John A Stamatoyannopoulos, Danish Saleheen, Ingrid B Borecki, Muredach P Reilly, Stephen S Rich and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of lipid research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

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  13. Novel Insight Into the Role ofFrontiers in genetics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Ani ManichaikulCenter for Public Health Genomics University of Virginia, Charlottesville, VA Biostatistics Section, Department of Public Health Sciences, University of Virginia, Charlottesville, VA.
Xin-Qun WangBiostatistics Section, Department of Public Health Sciences, University of Virginia, Charlottesville, VA.
Wei ZhaoDepartment of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.
Mary K WojczynskiDepartment of Genetics, Washington University School of Medicine, St. Louis, MO.
Kyle SiebenthallDepartment of Genome Sciences, University of Washington, Seattle, WA.
John A StamatoyannopoulosDepartment of Genome Sciences, University of Washington, Seattle, WA.
Danish SaleheenDepartment of Medicine UW Diabetes Institute, University of Washington, Seattle, WA Center for Non-Communicable Diseases, Karachi, Pakistan.
Ingrid B BoreckiDepartment of Genetics, Washington University School of Medicine, St. Louis, MO.
Muredach P ReillyDepartment of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA The Cardiovascular Institute, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.
Stephen S RichCenter for Public Health Genomics University of Virginia, Charlottesville, VA.
Karin E BornfeldtDepartment of Medicine UW Diabetes Institute, University of Washington, Seattle, WA Center for Non-Communicable Diseases, Karachi, Pakistan bornf@u.washington.edu.
University of Washington · USUniversity of Virginia · USUniversity of Pennsylvania · USWashington University in St. Louis · US

Funding

Institute for Clinical and Translational ResearchUL1TR001079 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2013 to 2017
$60.1M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Sakeneh Zraika · 1986 to 2026
$41.4M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
ZINC AND CA EDTA THERAPY OF PLUMBISMM01RR000052 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BELCHER, HAROLYN MILLICENT EDITH · 1985 to 2007
$37.3M
Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
Role of Serum Amyloid A in Diabetic Vascular DiseaseP01HL092969 · NHLBI · UNIVERSITY OF WASHINGTON · PI BORNFELDT, KARIN E. · 2008 to 2019
$23.5M
Environmetal Pathology/Toxicology Training ProgramT32ES007032 · NIEHS · UNIVERSITY OF WASHINGTON · PI FAUSTMAN, ELAINE M, ROSENFELD, MICHAEL E · 1985 to 2023
$10.7M
Multi-Ethnic Study of Atherosclerosis (MESA) StudyR01HL071205 · NHLBI · CEDARS-SINAI MEDICAL CENTER · PI ROTTER, JEROME I · 2003 to 2007
$10.4M
Elucidation of Tissue-Specific Transcriptomic Profiles in Cardiometabolic DiseaseR01HL113147 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LI, MINGYAO, REILLY, MUREDACH P · 2012 to 2022
$6.8M
FHS-SCAN Genome Wide Association Scan for Atherosclerosis Pathway GenesR01HL087700 · NHLBI · WASHINGTON UNIVERSITY · PI PROVINCE, MICHAEL A. · 2006 to 2008
$5.4M
Genomic Predictors of Arteriosclerosis in HypertensivesR01HL087660 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KARDIA, SHARON L · 2007 to 2009
$5.1M
NCATS NIH HHS UL1 TR000040NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1 TR001079NCRR NIH HHS M01 RR000052NHGRI NIH HHS U01 HG004729NHLBI NIH HHS K24 HL107643NHLBI NIH HHS N01 HC005187NHLBI NIH HHS N01 HC045134NHLBI NIH HHS N01 HC045204NHLBI NIH HHS N01 HC045205NHLBI NIH HHS N01 HC048047NHLBI NIH HHS N01 HC048048NHLBI NIH HHS N01 HC048049NHLBI NIH HHS N01 HC048050NHLBI NIH HHS N01 HC065226NHLBI NIH HHS N01 HC095095NHLBI NIH HHS N01 HC095159NHLBI NIH HHS N01 HC095160NHLBI NIH HHS N01 HC095161NHLBI NIH HHS N01 HC095162NHLBI NIH HHS N01 HC095163NHLBI NIH HHS N01 HC095164NHLBI NIH HHS N01 HC095165NHLBI NIH HHS N01 HC095166NHLBI NIH HHS N01 HC095167NHLBI NIH HHS N01 HC095168NHLBI NIH HHS N01 HC095169NHLBI NIH HHS N01 HC095170NHLBI NIH HHS N01 HC095171NHLBI NIH HHS N01 HC095172NHLBI NIH HHS N02 HL064278NHLBI NIH HHS P01 HL092969NHLBI NIH HHS R01 HL059684NHLBI NIH HHS R01 HL062887NHLBI NIH HHS R01 HL071025NHLBI NIH HHS R01 HL071051NHLBI NIH HHS R01 HL071205NHLBI NIH HHS R01 HL071250NHLBI NIH HHS R01 HL071251NHLBI NIH HHS R01 HL071252NHLBI NIH HHS R01 HL071258NHLBI NIH HHS R01 HL071259NHLBI NIH HHS R01 HL084099NHLBI NIH HHS R01 HL085571NHLBI NIH HHS R01 HL087660NHLBI NIH HHS R01 HL087698NHLBI NIH HHS R01 HL087700NHLBI NIH HHS R01 HL088215NHLBI NIH HHS R01 HL111398NHLBI NIH HHS R01 HL113147NHLBI NIH HHS R01 HL117078NHLBI NIH HHS R01 HL122843NHLBI NIH HHS R01 HL126028NHLBI NIH HHS RC1 HL100245NHLBI NIH HHS U01 HL108636NIDDK NIH HHS DP3 DK108209NIDDK NIH HHS P30 DK017047NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01 DK071224NIDDK NIH HHS R01 DK075681NIDDK NIH HHS R01 DK090505NIEHS NIH HHS T32 ES007032NINR NIH HHS R01 NR008153
6 · The paper itself

Abstract

Long-chain acyl-CoA synthetase 1 (ACSL1) converts free fatty acids into acyl-CoAs. Mouse studies have revealed that ACSL1 channels acyl-CoAs to β-oxidation, thereby reducing glucose utilization, and is required for diabetes-accelerated atherosclerosis. The role of ACSL1 in humans is unknown. We therefore examined common variants in the human ACSL1 locus by genetic association studies for fasting glucose, diabetes status, and preclinical atherosclerosis by using the MAGIC and DIAGRAM consortia; followed by analyses in participants from the Multi-Ethnic Study of Atherosclerosis, the Penn-T2D consortium, and a meta-analysis of subclinical atherosclerosis in African Americans; and finally, expression quantitative trait locus analysis and identification of DNase I hypersensitive sites (DHS). The results show that three SNPs in ACSL1 (rs7681334, rs735949, and rs4862423) are associated with fasting glucose or diabetes status in these large (>200,000 subjects) data sets. Furthermore, rs4862423 is associated with subclinical atherosclerosis and coincides with a DHS highly accessible in human heart. SNP rs735949 is in strong linkage disequilibrium with rs745805, significantly associated with ACSL1 levels in skin, suggesting tissue-specific regulatory mechanisms. This study provides evidence in humans of ACSL1 SNPs associated with fasting glucose, diabetes, and subclinical atherosclerosis and suggests links among these traits and acyl-CoA synthesis.

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideAtherosclerosisBlack or African AmericanBlood GlucoseCalcinosisChromatinCoenzyme A LigasesCoronary Artery DiseaseDiabetes Mellitus, Type 2FastingGenetic Association StudiesGenetic Predisposition to DiseaseHumansQuantitative Trait LociACSL1 protein, humanBlood GlucoseChromatinCoenzyme A Ligasesendocrine disordersfatty acidfatty acid/metabolismgeneticsgenomics

Identifiers

PMID26711138
PMCPMC4766992
OpenAlexW2255567127

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.