Evidence map›Paper›PMID 26710848›Full record

ArticleThe Journal of biological chemistry2016

Insight into the Human DNA Primase Interaction with Template-Primer.

Andrey G Baranovskiy, Yinbo Zhang, Yoshiaki Suwa, Jianyou Gu, Nigar D Babayeva, Youri I Pavlov, Tahir H Tahirov

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mouse PrimPol Outperforms Its Human Counterpart as a Robust DNA Primase.International journal of molecular sciences · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Andrey G BaranovskiyFrom the Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center.
Yinbo ZhangFrom the Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, Department of Biochemistry and Molecular Biology, and.
Yoshiaki SuwaFrom the Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center.
Jianyou GuFrom the Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center.
Nigar D BabayevaFrom the Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center.
Youri I PavlovFrom the Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, Department of Biochemistry and Molecular Biology, and Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska 68198.
Tahir H TahirovFrom the Eppley Institute for Research in Cancer and Allied Diseases, Fred and Pamela Buffett Cancer Center, ttahirov@unmc.edu.
Fred and Pamela Buffett Cancer CenterUniversity of Nebraska at Omaha · US

Funding

UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Apar Kishor Ganti · 1985 to 2026
$55.0M
Human DNA Replication Machines: Structure-Function of Polymerase Alpha-PrimaseR01GM101167 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI TAHIROV, TAHIR H · 2013 to 2017
$1.9M
Control of Genome Stability by Replicative DNA PolymerasesR01CA129925 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI PAVLOV, YOURI I · 2008 to 2012
$1.2M
NCI NIH HHS CA129925NCI NIH HHS P30CA03672NCI NIH HHS P30 CA036727NCI NIH HHS R01 CA129925NIGMS NIH HHS GM101167NIGMS NIH HHS R01 GM101167
6 · The paper itself

Abstract

DNA replication in almost all organisms depends on the activity of DNA primase, a DNA-dependent RNA polymerase that synthesizes short RNA primers of defined size for DNA polymerases. Eukaryotic and archaeal primases are heterodimers consisting of small catalytic and large accessory subunits, both of which are necessary for the activity. The mode of interaction of primase subunits with substrates during the various steps of primer synthesis that results in the counting of primer length is not clear. Here we show that the C-terminal domain of the large subunit (p58C) plays a major role in template-primer binding and also defines the elements of the DNA template and the RNA primer that interact with p58C. The specific mode of interaction with a template-primer involving the terminal 5'-triphosphate of RNA and the 3'-overhang of DNA results in a stable complex between p58C and the DNA/RNA duplex. Our results explain how p58C participates in RNA synthesis and primer length counting and also indicate that the binding site for initiating NTP is located on p58C. These findings provide notable insight into the mechanism of primase function and are applicable for DNA primases from other species.

Indexed as

Models, MolecularTranscription, GeneticBinding SitesDNA-Directed DNA PolymeraseDNA PrimaseDNA, Single-StrandedElectrophoretic Mobility Shift AssayFluorescence PolarizationFluorescent DyesHumansKineticsMultifunctional EnzymesNucleic Acid ConformationPeptide FragmentsProtein ConformationProtein Interaction Domains and MotifsDNA-Directed DNA PolymeraseDNA PrimaseDNA, Single-StrandedFluorescent DyesMultifunctional EnzymesPeptide FragmentsPRIM1 protein, humanPRIM2 protein, humanPrimPol protein, humanRecombinant ProteinsRNA5′-triphosphateDNA primaseDNA-protein interactionDNA replicationgel electrophoresishumanp58 subunitprimase activityRNA/DNA duplexRNA primer length countingRNA synthesis

Identifiers

PMID26710848
PMCPMC4813500
OpenAlexW2275614981

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.