Evidence map›Paper›PMID 26709729›Full record

ArticleJournal of visualized experiments : JoVE2015

Protocol for Three-dimensional Confocal Morphometric Analysis of Astrocytes.

Maryam Bagheri, Arjang Rezakhani, Mehrdad Roghani, Mohammad T Joghataei, Simin Mohseni

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Amelioration of amyloid beta (AβIranian journal of basic medical sciences · 2023
    Article
  4. GFAP and Neuron Specific Enolase (NSE) in the Serum of Suicide Attempters.Medical journal of the Islamic Republic of Iran · 2022
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Maryam BagheriDepartment of Clinical and Experimental Medicine, Linköping University; bagheri_ph@yahoo.com.
Arjang RezakhaniDepartment of Clinical and Experimental Medicine, Linköping University.
Mehrdad RoghaniNeurophysiology Research Center, Shahed University.
Mohammad T JoghataeiCellular and Molecular Research Center, Iran University of Medical Sciences; School of Advanced Technologies in Medicine, Iran University of Medical Sciences.
Simin MohseniDepartment of Clinical and Experimental Medicine, Linköping University.
Linköping University · SEIran University of Medical Sciences · IRShahed University · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As glial cells in the brain, astrocytes have diverse functional roles in the central nervous system. In the presence of harmful stimuli, astrocytes modify their functional and structural properties, a condition called reactive astrogliosis. Here, a protocol for assessment of the morphological properties of astrocytes is presented. This protocol includes quantification of 12 different parameters i.e. the surface area and volume of the tissue covered by an astrocyte (astrocyte territory), the entire astrocyte including branches, cell body, and nucleus, as well as total length and number of branches, the intensity of fluorescence immunoreactivity of antibodies used for astrocyte detection, and astrocyte density (number/1,000 µm(2)). For this purpose three-dimensional (3D) confocal microscopic images were created, and 3D image analysis software such as Volocity 6.3 was used for measurements. Rat brain tissue exposed to amyloid beta1-40 (Aβ1-40) with or without a therapeutic intervention was used to present the method. This protocol can also be used for 3D morphometric analysis of other cells from either in vivo or in vitro conditions.

Indexed as

Amyloid beta-PeptidesAnimalsAstrocytesBrainImaging, Three-DimensionalMicroscopy, ConfocalPeptide FragmentsRatsAmyloid beta-Peptidesamyloid beta-protein (1-40)Peptide Fragments

Identifiers

PMID26709729
PMCPMC4692798
OpenAlexW2204390803

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.