Evidence map›Paper›PMID 26709625›Full record

ArticleJournal of visualized experiments : JoVE2015

In Situ Mapping of the Mechanical Properties of Biofilms by Particle-tracking Microrheology.

Su C Chew, Scott A Rice, Staffan Kjelleberg, Liang Yang

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In one paragraph

Article in Journal of visualized experiments : JoVE, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Su C ChewInterdisciplinary Graduate School, Nanyang Technological University; Singapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University.
Scott A RiceSingapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University; School of Biological Sciences, Nanyang Technological University; Centre for Marine Bio-Innovation, University of New South Wales; School of Biological, Earth and Environmental Sciences, University of New South Wales.
Staffan KjellebergSingapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University; School of Biological Sciences, Nanyang Technological University; Centre for Marine Bio-Innovation, University of New South Wales; School of Biotechnology and Biomolecular Sciences Sciences, University of New South Wales.
Liang YangSingapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University; School of Biological Sciences, Nanyang Technological University; yangliang@ntu.edu.sg.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial cells are able to form surface-attached biofilm communities known as biofilms by encasing themselves in extracellular polymeric substances (EPS). The EPS serves as a physical and protective scaffold that houses the bacterial cells and consists of a variety of materials that includes proteins, exopolysaccharides and DNA. The composition of the EPS may change, which remodels the mechanic properties of the biofilm to further develop or support alternative biofilm structures, such as streamers, as a response to environmental cues. Despite this, there are little quantitative descriptions on how EPS components contribute to the mechanical properties and function of biofilms. Rheology, the study of the flow of matter, is of particular relevance to biofilms as many biofilms grow in flow conditions and are constantly exposed to shear stress. It also provides measurement and insight on the spreading of the biofilm on a surface. Here, particle-tracking microrheology is used to examine the viscoelasticity and effective crosslinking roles of different matrix components in various parts of the biofilm during development. This approach allows researchers to measure mechanic properties of biofilms at the micro-scale, which might provide useful information for controlling and engineering biofilms.

Indexed as

BiofilmsParticle SizePseudomonas aeruginosaRheologyViscoelastic SubstancesViscosityViscoelastic Substances

Identifiers

PMID26709625
PMCPMC4692780

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.