Evidence map›Paper›PMID 26708248›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2016

Whole genome analysis of Japanese bovine toroviruses reveals natural recombination between porcine and bovine toroviruses.

Mika Ito, Shinobu Tsuchiaka, Yuki Naoi, Konosuke Otomaru, Mitsuo Sato, Tsuneyuki Masuda, Kei Haga, Tomoichiro Oka, Hiroshi Yamasato, Tsutomu Omatsu and 9 more

Open access · greenAbstract read
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Mika ItoIshikawa Nanbu Livestock Hygiene Service Center, Saida, Kanazawa, Ishikawa 920-3101, Japan.
Shinobu TsuchiakaResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Yuki NaoiResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Konosuke OtomaruJoint Faculty of Veterinary Medicine, Kagoshima University, Korimoto, Kagoshima 890-0065, Japan.
Mitsuo SatoTochigi Prefectural Central District Animal Hygiene Service Center, Hiraidekougyoudanchi, Utsunomiya, Tochigi 321-0905, Japan.
Tsuneyuki MasudaKurayoshi Livestock Hygiene Service Center, Kiyotani, Kurayoshi, Tottori 683-0017, Japan.
Kei HagaDepartment of Virology II, National Institute of Infectious Diseases, Musashimurayama, Tokyo 208-0011, Japan.
Tomoichiro OkaDepartment of Virology II, National Institute of Infectious Diseases, Musashimurayama, Tokyo 208-0011, Japan.
Hiroshi YamasatoKurayoshi Livestock Hygiene Service Center, Kiyotani, Kurayoshi, Tottori 683-0017, Japan.
Tsutomu OmatsuResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Satoshi SugimuraInstitute of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Hiroshi AokiFaculty of Veterinary Science, Nippon Veterinary and Life Science University, Musashino, Tokyo 180-8602, Japan.
Tetsuya FuruyaResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan; Department of Veterinary Medicine, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Yukie KatayamaResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Mami ObaResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Junsuke ShiraiResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan; Department of Veterinary Medicine, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Kazuhiko KatayamaDepartment of Virology II, National Institute of Infectious Diseases, Musashimurayama, Tokyo 208-0011, Japan.
Tetsuya MizutaniResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
Makoto NagaiResearch and Education Center for Prevention of Global Infectious Disease of Animal, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan; Department of Veterinary Medicine, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan. Electronic address: m-nagai@cc.tuat.ac.jp.
Tokyo University of Agriculture and Technology · JPNational Institute of Infectious Diseases · JPKurayoshi Museum · JPKagoshima University · JPNippon Veterinary and Life Science University · JPTochigi Prefectural Police · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bovine toroviruses (BToVs), belong to the subfamily Toroviridae within the family Coronaviridae, and are pathogens, causing enteric disease in cattle. In Japan, BToVs are distributed throughout the country and cause gastrointestinal infection of calves and cows. In the present study, complete genome sequences of two Japanese BToVs and partial genome sequences of two Japanese BToVs and one porcine torovirus (PToV) from distant regions in Japan were determined and genetic analyses were performed. Pairwise nucleotide comparison and phylogenetic analyses revealed that Japanese BToVs shared high identity with each other and showed high similarities with BToV Breda1 strain in S, M, and HE coding regions. Japanese BToVs showed high similarities with porcine toroviruses in ORF1a, ORF1b, and N coding regions and the 5' and 3' untranslated regions, suggestive of a natural recombination event. Recombination analyses mapped the putative recombinant breakpoints to the 3' ends of the ORF1b and HE regions. These findings suggest that the interspecies recombinant nature of Japanese BToVs resulted in a closer relationship between BToV Breda1 and PToVs.

Indexed as

Genome, ViralRecombination, GeneticAnimalsBase SequenceCattleCattle DiseasesHigh-Throughput Nucleotide SequencingJapanMolecular Sequence DataOpen Reading FramesPhylogenySequence AlignmentSequence Analysis, DNASwineSwine DiseasesTorovirusBovine torovirusJapanNatural recombinationPorcine torovirus

Identifiers

PMID26708248
PMCPMC7185535
OpenAlexW2205790409

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.