Evidence map›Paper›PMID 26706451›Full record

ReviewCurrent opinion in genetics & development2016

The redundancy of the mammalian heterochromatic compartment.

Joan C Ritland Politz, David Scalzo, Mark Groudine

Open access · greenAbstract readReview
In one paragraph

Review in Current opinion in genetics & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Chromatin Hubs: A biological and computational outlook.Computational and structural biotechnology journal · 2022
    Review
  11. Review
  12. Review
  13. Close to the edge: Heterochromatin at the nucleolar and nuclear peripheries.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  14. Stress as a Chromatin Landscape Architect.Frontiers in cell and developmental biology · 2021
    Review
  15. Article
  16. Review
  17. Heterochromatic regions in Japanese quail chromosomes: comprehensive molecular-cytogenetic characterization and 3D mapping in interphase nucleus.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019
    Article
  18. Article
  19. Silencing of endogenous retroviruses by heterochromatin.Cellular and molecular life sciences : CMLS · 2017
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Joan C Ritland PolitzFred Hutchinson Cancer Research Center, Seattle, WA, United States. Electronic address: jritland@fredhutch.org.
David ScalzoFred Hutchinson Cancer Research Center, Seattle, WA, United States.
Mark GroudineFred Hutchinson Cancer Research Center, Seattle, WA, United States. Electronic address: markg@fredhutch.org.
Fred Hutch Cancer Center · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
MAINTENANCE OF GENE EXPRESSION IN THE RED CELL LINEAGER01HL065440 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 2000 to 2018
$12.4M
FUNCTION OF HUMAN &MOUSE B GLOBIN LOCUS CONTROL REGIONSR37DK044746 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 1997 to 2016
$12.3M
A toolkit to reversibly disrupt nuclear bodies and move genes among compartmentsU01DA040583 · NIDA · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 2015 to 2018
$1.7M
NCI NIH HHS P30 CA015704NHLBI NIH HHS R01 HL065440NIDA NIH HHS U01 DA040583NIDDK NIH HHS R37 DK044746
6 · The paper itself

Abstract

Two chromatin compartments are present in most mammalian cells; the first contains primarily euchromatic, early replicating chromatin and the second, primarily late-replicating heterochromatin, which is the subject of this review. Heterochromatin is concentrated in three intranuclear regions: the nuclear periphery, the perinucleolar space and in pericentromeric bodies. We review recent evidence demonstrating that the heterochromatic compartment is critically involved in global nuclear organization and the maintenance of genome stability, and discuss models regarding how this compartment is formed and maintained. We also evaluate our understanding of how heterochromatic sequences (herein named heterochromatic associated regions (HADs)) might be tethered within these regions and review experiments that reveal the stochastic nature of individual HAD positioning within the compartment. These investigations suggest a substantial level of functional redundancy within the heterochromatic compartment.

Indexed as

AnimalsBase SequenceCell NucleusChromatinEuchromatinGenomic InstabilityHeterochromatinMammalsChromatinEuchromatinHeterochromatin

Identifiers

PMID26706451
PMCPMC4911328
OpenAlexW2216502324

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.