Evidence map›Paper›PMID 26704365›Full record

SynthesisHuman molecular genetics2016

Chronic gastroesophageal reflux disease shares genetic background with esophageal adenocarcinoma and Barrett's esophagus.

Puya Gharahkhani, Joyce Tung, David Hinds, Aniket Mishra, Barrett's and Esophageal Adenocarcinoma Consortium (BEACON), Thomas L Vaughan, David C Whiteman, Stuart MacGregor, BEACON study investigators

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Pooled it
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  16. Screening and Preventive Strategies in Esophagogastric Cancer.Surgical oncology clinics of North America · 2017
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Puya GharahkhaniStatistical Genetics Laboratory, puya.gharahkhani@qimrberghofer.edu.au.
Joyce Tung23andMe, Mountain View, CA 94035, USA.
David Hinds23andMe, Mountain View, CA 94035, USA.
Aniket MishraStatistical Genetics Laboratory, Department of Complex Trait Genetics, VU University, Center for Neurogenomics and Cognitive Research, Amsterdam, The Netherlands and.
Barrett's and Esophageal Adenocarcinoma Consortium (BEACON)
Thomas L VaughanDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109-1024, USA.
David C WhitemanCancer Control, QIMR Berghofer Medical Research Institute, Brisbane, QLD 4029, Australia.
Stuart MacGregorStatistical Genetics Laboratory.
BEACON study investigators
Fred Hutch Cancer Center · USQIMR Berghofer Medical Research Institute · AU

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
PHYLOGENIES of Barrett's Esophagus LineagesP01CA091955 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GRADY, WILLIAM MALLORY · 2002 to 2019
$35.9M
UT M.D. Anderson Cancer Center SPORE in MelanomaP50CA093459 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GRIMM, ELIZABETH A · 2004 to 2014
$23.7M
Barrett's and Esophageal Adenocarcinoma Genetic Susceptibility Study (BEAGESS)R01CA136725 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L, WHITEMAN, DAVID C · 2009 to 2011
$7.8M
Epidemiology and Incidence of Barrett's EsophagusR01DK063616 · NIDDK · KAISER FOUNDATION RESEARCH INSTITUTE · PI CORLEY, DOUGLAS ALLEN · 2002 to 2010
$2.6M
IKK Signals in Lymphocyte Physiology and PathologyR01AI057947 · NIAID · IMMUNE DISEASE INSTITUTE, INC. · PI RAJEWSKY, KLAUS · 2004 to 2008
$2.3M
ESTABLISHED INVESTIGATOR AWARD IN CANCER PREVENTION AND CONTROLK05CA124911 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L · 2007 to 2016
$1.6M
Genetic Predictors for DNA Repair Phenotype in CMMR01CA100264 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WEI, QINGYI · 2004 to 2008
$1.5M
Statistical Methods for Gene Environment Interactions In Lung CancerR01CA133996 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AMOS, CHRISTOPHER I. · 2007 to 2009
$790k
EPIDEMIOLOGY OF BARRETTS ESOPHAGUSR01CA072866 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI VAUGHAN, THOMAS L · 1997 to 2000
$543k
ETIOLOGY OF GASTRIC CARDIA/ESOPHAGEAL ADENOCARCINOMAR01CA059636 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BERNSTEIN, LESLIE · 1993 to 1997
–
RISK FACTORS FOR CANCER--ESOPHAGUS AND GASTRIC CARDIAR01CA057947 · NCI · UPPSALA UNIVERSITY · PI ADAMI, HANS-OLOV · 1994 to 1996
–
NCI NIH HHS 2P50CA093459NCI NIH HHS K05 CA124911NCI NIH HHS P01 CA091955NCI NIH HHS P30 CA016672NCI NIH HHS P30CA016672NCI NIH HHS P50 CA093459NCI NIH HHS R01 CA072866NCI NIH HHS R01 CA100264NCI NIH HHS R01CA100264NCI NIH HHS R01 CA133996NCI NIH HHS R01CA133996NCI NIH HHS R01 CA136725NCI NIH HHS R01CA136725NCI NIH HHS R01 CA57947-03NCI NIH HHS R01CA59636NIAID NIH HHS R01 AI057947NIDDK NIH HHS R01 DK063616NIDDK NIH HHS R01DK63616
6 · The paper itself

Abstract

Esophageal adenocarcinoma (EA) is a rapidly fatal cancer with rising incidence in the developed world. Most EAs arise in a metaplastic epithelium, Barrett's esophagus (BE), which is associated with greatly increased risk of EA. One of the key risk factors for both BE and EA is chronic gastroesophageal reflux disease (GERD). This study used the linkage disequilibrium (LD) score regression and genomic profile risk scoring approaches to investigate the contribution of multiple common single-nucleotide polymorphisms (SNPs) to the risk of GERD, and the extent of genetic overlap between GERD and BE or EA. Using LD score regression, we estimated an overall phenotypic variance of 7% (95% CI 3-11%) for GERD explained by all the genotyped SNPs. A genetic correlation of 77% (s.e. = 24%, P = 0.0012) between GERD and BE and 88% between GERD and EA (s.e. = 25%, P = 0.0004) was estimated using the LD score regression approach. Results from the genomic profile risk scoring approach, as a robustness check, were broadly similar to those from the LD score regression. This study provides the first evidence for a polygenic basis for GERD and supports for a polygenic overlap between GERD and BE, and GERD and EA.

Indexed as

AdenocarcinomaBarrett EsophagusCase-Control StudiesEsophageal NeoplasmsFemaleGastroesophageal RefluxGenetic Association StudiesGenetic BackgroundGenetic Predisposition to DiseaseGenetic VariationHumansIncidenceLinkage DisequilibriumMalePolymorphism, Single NucleotideRisk Assessment

Identifiers

PMID26704365
PMCPMC4743691
OpenAlexW2258087927

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.