Evidence map›Paper›PMID 26703476›Full record

ArticleThe Journal of biological chemistry2016

Single-molecule Force Spectroscopy Predicts a Misfolded, Domain-swapped Conformation in human γD-Crystallin Protein.

Sergi Garcia-Manyes, David Giganti, Carmen L Badilla, Ainhoa Lezamiz, Judit Perales-Calvo, Amy E M Beedle, Julio M Fernández

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 48 citations in OpenAlex.

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  13. [Resonance light scattering spectroscopy can directly characterize protein solubility].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Sergi Garcia-ManyesFrom the Department of Physics and Randall Division of Cell and Molecular Biophysics, King's College London, London WC2R 2LS, United Kingdom and sergi.garcia-manyes@kcl.ac.uk.
David Gigantithe Department of Biological Sciences, Columbia University, New York, New York 10027.
Carmen L Badillathe Department of Biological Sciences, Columbia University, New York, New York 10027.
Ainhoa LezamizFrom the Department of Physics and Randall Division of Cell and Molecular Biophysics, King's College London, London WC2R 2LS, United Kingdom and.
Judit Perales-CalvoFrom the Department of Physics and Randall Division of Cell and Molecular Biophysics, King's College London, London WC2R 2LS, United Kingdom and.
Amy E M BeedleFrom the Department of Physics and Randall Division of Cell and Molecular Biophysics, King's College London, London WC2R 2LS, United Kingdom and.
Julio M Fernándezthe Department of Biological Sciences, Columbia University, New York, New York 10027.
King's College London · GBColumbia University · US

Funding

Single Molecule Studies of Titin ElasticityR01HL061228 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 1999 to 2017
$7.4M
Nanomechanics of the extracellular matrixR01HL066030 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 2001 to 2013
$5.0M
Biotechnology and Biological Sciences Research Council BB/J00992X/1CSR NIH HHS RG120038NHLBI NIH HHS HL61228NHLBI NIH HHS HL66030NHLBI NIH HHS R01 HL061228NHLBI NIH HHS R01 HL066030
6 · The paper itself

Abstract

Cataract is a protein misfolding disease where the size of the aggregate is directly related to the severity of the disorder. However, the molecular mechanisms that trigger the onset of aggregation remain unknown. Here we use a combination of protein engineering techniques and single-molecule force spectroscopy using atomic force microscopy to study the individual unfolding pathways of the human γD-crystallin, a multidomain protein that must remain correctly folded during the entire lifetime to guarantee lens transparency. When stretching individual polyproteins containing two neighboring HγD-crystallin monomers, we captured an anomalous misfolded conformation in which the β1 and β2 strands of the N terminus domain of two adjacent monomers swap. This experimentally elusive domain-swapped conformation is likely to be responsible for the increase in molecular aggregation that we measure in vitro. Our results demonstrate the power of force spectroscopy at capturing rare misfolded conformations with potential implications for the understanding of the molecular onset of protein aggregation.

Indexed as

Protein AggregatesProtein Foldinggamma-CrystallinsHumansProtein Structure, SecondaryProtein Structure, TertiaryCRYGD protein, humangamma-CrystallinsProtein Aggregatesatomic force microscopy (AFM)cataractcrystallinprotein misfoldingsingle-molecule biophysics

Identifiers

PMID26703476
PMCPMC4759196
OpenAlexW2209466135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.