Evidence map›Paper›PMID 26703466›Full record

ArticleThe Journal of biological chemistry2016

Structure of Guanylyl Cyclase Activator Protein 1 (GCAP1) Mutant V77E in a Ca2+-free/Mg2+-bound Activator State.

Sunghyuk Lim, Igor V Peshenko, Elena V Olshevskaya, Alexander M Dizhoor, James B Ames

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

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  12. Dimerization of Neuronal Calcium Sensor Proteins.Frontiers in molecular neuroscience · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Sunghyuk LimFrom the Department of Chemistry, University of California, Davis, California 95616 and.
Igor V PeshenkoDepartment of Research, Salus University, Elkins Park, Pennsylvania 19027.
Elena V OlshevskayaDepartment of Research, Salus University, Elkins Park, Pennsylvania 19027.
Alexander M DizhoorDepartment of Research, Salus University, Elkins Park, Pennsylvania 19027.
James B AmesFrom the Department of Chemistry, University of California, Davis, California 95616 and jbames@ucdavis.edu.
Salus University · USUniversity of California, Davis · US

Funding

REGULATION OF CYCLIC GMP SYNTHESIS IN PHOTORECEPTORSR01EY011522 · NEI · WAYNE STATE UNIVERSITY · PI ALEXANDER M DIZHOOR · 1996 to 2026
$9.9M
MEMBRANE TARGETING CALCIUM SENSORS IN VISIONR01EY012347 · NEI · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI AMES, JAMES B · 1999 to 2023
$6.9M
ACQUISITION OF 500 MHZ NMR SPECTROMETERS10RR011973 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI LA MAR, GERD N · 1997 to 1997
–
NCRR NIH HHS S10 RR011973NEI NIH HHS EY012347NEI NIH HHS EY11522NEI NIH HHS R01 EY011522NEI NIH HHS R01 EY012347
6 · The paper itself

Abstract

GCAP1, a member of the neuronal calcium sensor subclass of the calmodulin superfamily, confers Ca(2+)-sensitive activation of retinal guanylyl cyclase 1 (RetGC1). We present NMR resonance assignments, residual dipolar coupling data, functional analysis, and a structural model of GCAP1 mutant (GCAP1(V77E)) in the Ca(2+)-free/Mg(2+)-bound state. NMR chemical shifts and residual dipolar coupling data reveal Ca(2+)-dependent differences for residues 170-174. An NMR-derived model of GCAP1(V77E) contains Mg(2+) bound at EF2 and looks similar to Ca(2+) saturated GCAP1 (root mean square deviations = 2.0 Å). Ca(2+)-dependent structural differences occur in the fourth EF-hand (EF4) and adjacent helical region (residues 164-174 called the Ca(2+) switch helix). Ca(2+)-induced shortening of the Ca(2+) switch helix changes solvent accessibility of Thr-171 and Leu-174 that affects the domain interface. Although the Ca(2+) switch helix is not part of the RetGC1 binding site, insertion of an extra Gly residue between Ser-173 and Leu-174 as well as deletion of Arg-172, Ser-173, or Leu-174 all caused a decrease in Ca(2+) binding affinity and abolished RetGC1 activation. We conclude that Ca(2+)-dependent conformational changes in the Ca(2+) switch helix are important for activating RetGC1 and provide further support for a Ca(2+)-myristoyl tug mechanism.

Indexed as

Models, MolecularAmino Acid SequenceAmino Acid SubstitutionAnimalsBinding SitesCalciumCattleEye ProteinsGuanylate CyclaseGuanylate Cyclase-Activating ProteinsHEK293 CellsHumansLipoylationMagnesiumMolecular Sequence DataMutationCalciumEye ProteinsGuanylate Cyclaseguanylate cyclase 1Guanylate Cyclase-Activating ProteinsMagnesiumMyristic AcidReceptors, Cell SurfaceRecombinant Proteinscalciumcalcium-binding proteincalorimetryguanylate cyclase (guanylyl cyclase)nuclear magnetic resonance (NMR)phototransductionvision

Identifiers

PMID26703466
PMCPMC4813471
OpenAlexW2281890634

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.