Evidence map›Paper›PMID 26703384›Full record

ArticlePlant cell reports2016

Activation of anthocyanin biosynthesis by expression of the radish R2R3-MYB transcription factor gene RsMYB1.

Sun-Hyung Lim, Ji-Hye Song, Da-Hye Kim, Jae Kwang Kim, Jong-Yeol Lee, Young-Mi Kim, Sun-Hwa Ha

Abstract read
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In one paragraph

Article in Plant cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Evolutionary trajectory of transcription factors and selection of targets for metabolic engineering.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. The long noncoding RNAFrontiers in plant science · 2023
    Article
  10. Article
  11. Article
  12. Anthocyanin Biosynthesis Induced by MYB Transcription Factors in Plants.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Frontiers in plant science · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Anthocyanin Biosynthesis Genes as Model Genes for Genome Editing in Plants.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sun-Hyung LimNational Academy of Agricultural Science, Rural Development Administration, Jeonju, 54874, Republic of Korea. limsh2@korea.kr.
Ji-Hye SongNational Academy of Agricultural Science, Rural Development Administration, Jeonju, 54874, Republic of Korea.
Da-Hye KimNational Academy of Agricultural Science, Rural Development Administration, Jeonju, 54874, Republic of Korea.
Jae Kwang KimDivision of Life Sciences and Bio-Resource and Environmental Center, Incheon National University, Incheon, 22012, Republic of Korea.
Jong-Yeol LeeNational Academy of Agricultural Science, Rural Development Administration, Jeonju, 54874, Republic of Korea.
Young-Mi KimNational Academy of Agricultural Science, Rural Development Administration, Jeonju, 54874, Republic of Korea.
Sun-Hwa HaDepartment of Genetic Engineering and Graduate School of Biotechnology, Kyung Hee University, Yongin, 17104, Republic of Korea. sunhwa@khu.ac.kr.
Rural Development Administration · KRIncheon National University · KRKyung Hee University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageRsMYB1, a MYB TF of red radish origin, was characterized as a positive regulator to transcriptionally activate the anthocyanin biosynthetic machinery by itself in Arabidopsis and tobacco plants. Anthocyanins, providing the bright red-orange to blue-violet colors, are flavonoid-derived pigments with strong antioxidant activity that have benefits for human health. We isolated RsMYB1, which encodes an R2R3-MYB transcription factor (TF), from red radish plants (Raphanus sativus L.) that accumulate high levels of anthocyanins. RsMYB1 shows higher expression in red radish than in common white radish, in both leaves and roots, at different growth stages. Consistent with RsMYB1 function as an anthocyanin-promoting TF, red radishes showed higher expression of all six anthocyanin biosynthetic and two anthocyanin regulatory genes. Transient expression of RsMYB1 in tobacco showed that RsMYB1 is a positive regulator of anthocyanin production with better efficiency than the basic helix-loop-helix (bHLH) TF gene B-Peru. Also, the synergistic effect of RsMYB1 with B-Peru was larger than the effect of the MYB TF gene mPAP1D with B-peru. Arabidopsis plants stably expressing RsMYB1 produced red pigmentation throughout the plant, accompanied by up-regulation of the six structural and two regulatory genes for anthocyanin production. This broad transcriptional activation of anthocyanin biosynthetic machinery in Arabidopsis included up-regulation of TRANSPARENT TESTA8, which encodes a bHLH TF. These results suggest that overexpression of RsMYB1 promotes anthocyanin production by triggering the expression of endogenous bHLH genes as potential binding partners for RsMYB1. In addition, RsMYB1-overexpressing Arabidopsis plants had a higher antioxidant capacity than did non-transgenic control plants. Taken together, RsMYB1 is an actively positive regulator for anthocyanins biosynthesis in radish plants and it might be one of the best targets for anthocyanin production by single gene manipulation being applicable in diverse plant species.

Indexed as

AnthocyaninsArabidopsisGene Expression Regulation, PlantNicotianaPhylogenyPlant LeavesPlant ProteinsPlants, Genetically ModifiedRaphanusReverse Transcriptase Polymerase Chain ReactionTranscriptional ActivationTranscription FactorsAnthocyaninsPlant ProteinsTranscription FactorsAnthocyaninsAntioxidantR2R3-MYBRadish

Identifiers

PMID26703384
OpenAlexW2218837246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.