Evidence map›Paper›PMID 26702833›Full record

ArticleDevelopmental cell2015

Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome.

Jeremy M Shea, Ryan W Serra, Benjamin R Carone, Hennady P Shulha, Alper Kucukural, Michael J Ziller, Markus P Vallaster, Hongcang Gu, Andrew R Tapper, Paul D Gardner and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 135 citations in OpenAlex.

  1. Trial
  2. Environmental and Genetic Perturbations of the Sperm Epigenome.Advances in experimental medicine and biology · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Roles and regulation of tRNA-derived small RNAs in animals.Nature reviews. Molecular cell biology · 2024
    Review
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  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
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  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Jeremy M SheaDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Ryan W SerraDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Benjamin R CaroneDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Hennady P ShulhaProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA; Bioinformatics Core, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Alper KucukuralProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA; Bioinformatics Core, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Michael J ZillerDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Markus P VallasterDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Hongcang GuDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Andrew R TapperBrudnick Neuropsychiatric Research Institute, Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA 01604, USA.
Paul D GardnerBrudnick Neuropsychiatric Research Institute, Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA 01604, USA.
Alexander MeissnerDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Manuel GarberProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA; Bioinformatics Core, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Oliver J RandoDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address: oliver.rando@umassmed.edu.
University of Massachusetts Chan Medical School · USBroad Institute · US

Funding

University of Massachusetts Center for Clinical Science and Translational SupplementUL1TR001453 · NCATS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 2015 to 2024
$39.0M
University of Massachusetts Center for Clinical and Translational ScienceUL1TR000161 · NCATS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 2012 to 2015
$11.0M
Dietary effects on the sperm epigenomeR01HD080224 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RANDO, OLIVER J · 2014 to 2022
$5.9M
tRNA fragments as transgenerational information carriersDP1ES025458 · NIEHS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RANDO, OLIVER J · 2014 to 2018
$4.2M
Epimutations in Offspring Produced by Assisted Reproductive Technologies (ART)R01HD078679 · NICHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI MCCARREY, JOHN R, MEISSNER, ALEXANDER · 2014 to 2018
$3.1M
Transgenerational Effects of NicotineR01DA033664 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GARDNER, PAUL D, RANDO, OLIVER J · 2012 to 2016
$2.1M
Generation and characterization of tools for target-specific de novo DNA methylatR01DA036898 · NIDA · HARVARD UNIVERSITY · PI MEISSNER, ALEXANDER · 2013 to 2017
$1.7M
CELL AND MOLECULAR BIOLOGY OF REPRODUCTIONT32HD007439 · NICHD · WORCESTER FOUNDATION FOR BIOMEDICAL RES · PI WITMAN, GEORGE B · 1993 to 2015
$1.3M
Transgenerational effects of nicotine in F1 generation of exposed fathers in miceF32DA034414 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI VALLASTER, MARKUS PARZIVAL · 2013 to 2015
$171k
NCATS NIH HHS UL1 TR000161NCATS NIH HHS UL1 TR001453NICHD NIH HHS R01 HD078679NICHD NIH HHS R01 HD080224NICHD NIH HHS T32 HD007439NIDA NIH HHS F32 DA034414NIDA NIH HHS R01 DA033664NIDA NIH HHS R01 DA036898NIEHS NIH HHS DP1 ES025458
6 · The paper itself

Abstract

Paternal diet can impact metabolic phenotypes in offspring, but mechanisms underlying such intergenerational information transfer remain obscure. Here, we interrogate cytosine methylation patterns in sperm obtained from mice consuming one of three diets, generating whole genome methylation maps for four pools of sperm samples and for 12 individual sperm samples, as well as 61 genome-scale methylation maps. We find that "epivariation," either stochastic or due to unknown demographic or environmental factors, was a far stronger contributor to the sperm methylome than was the diet consumed. Variation in cytosine methylation was particularly dramatic over tandem repeat families, including ribosomal DNA (rDNA) repeats, but rDNA methylation was strongly correlated with genetic variation in rDNA copy number and was not influenced by paternal diet. These results identify loci of genetic and epigenetic lability in the mammalian genome but argue against a direct role for sperm cytosine methylation in dietary reprogramming of offspring metabolism.

Indexed as

Genetic VariationAnimalsDietDNA MethylationDNA, RibosomalEpigenesis, GeneticEpigenomicsGenomeMaleMiceSpermatozoaDNA, Ribosomal

Identifiers

PMID26702833
PMCPMC4691283
OpenAlexW2217449599

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.