Evidence map›Paper›PMID 26702428›Full record

ArticleData in brief2015

Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses.

Pablo H C G de Sá, Adonney A O Veras, Adriana R Carneiro, Rafael A Barúna, Luís C Guimarães, Kenny C Pinheiro, Anne C Pinto, Siomar C Soares, Maria P C Schneider, Vasco Azevedo and 2 more

Open access · goldAbstract read
In one paragraph

Article in Data in brief, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Pablo H C G de SáInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Adonney A O VerasInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Adriana R CarneiroInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Rafael A BarúnaInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Luís C GuimarãesInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Kenny C PinheiroInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Anne C PintoInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Siomar C SoaresInstitute of Biological and Natural Sciences, Federal University of Triângulo Mineiro, Uberaba, Minas Gerais, Brazil.
Maria P C SchneiderInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Vasco AzevedoInstitute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Artur SilvaInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Rommel T J RamosInstitute of Biological Sciences, Federal University of Pará, Belém, Pará, Brazil.
Universidade Federal do Pará · BRUniversidade Federal de Minas Gerais · BRUniversidade Federal do Triângulo Mineiro · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Corynebacterium pseudotuberculosis causes significant loss to goat and sheep farmers because it is the causal agent of the infectious disease caseous lymphadenitis, which may lead to outcomes ranging from skin injury to animal death (Ruiz et al., 2011) [1]. This bacterium was grown under osmotic (2 M), acid (pH) and heat (50 °C) stress and under control (Normal-BHI brain heart infusion) conditions, which simulate the conditions faced by the bacteria during the infectious process. Subsequently, cDNA of each condition was sequenced by the SOLiD3 Plus platform using the RNA-Seq technique [2], [3], [4]. The data produced was processed to evaluate the differential gene expression, which is helpful to understand the adaptation mechanisms during the infection in the host. The sequencing data of all conditions are available in the European Bioinformatics Institute (EBI) repository under accession number E-MTAB-2017.

Indexed as

Corynebaterium pseudotuberculosisInfection stressesRNA-seqSOLiD

Identifiers

PMID26702428
PMCPMC4669661
OpenAlexW2205229567

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.