Evidence map›Paper›PMID 26700726›Full record

ArticleBiology open2015

Tissue-specific tagging of endogenous loci in Drosophila melanogaster.

Kate Koles, Anna R Yeh, Avital A Rodal

Open access · goldAbstract read
In one paragraph

Article in Biology open, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  13. Article
  14. Engineering the Drosophila Genome for Developmental Biology.Journal of developmental biology · 2017
    Review
  15. Article
  16. Frontiers in cellular neuroscience · 2017
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kate KolesDepartment of Biology, Brandeis University, 415 South St, Waltham, MA 02454, USA k.koles@gmail.com arodal@brandeis.edu.
Anna R YehDepartment of Biology, Brandeis University, 415 South St, Waltham, MA 02454, USA.
Avital A RodalDepartment of Biology, Brandeis University, 415 South St, Waltham, MA 02454, USA k.koles@gmail.com arodal@brandeis.edu.
Brandeis University · US

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI KEVIN R COOK, THOMAS KAUFMAN · 2014 to 2026
$13.5M
Activity-dependent regulation of membrane traffic and growth signaling in neuronsDP2NS082127 · NINDS · BRANDEIS UNIVERSITY · PI RODAL, AVITAL ADAH · 2012 to 2012
$2.4M
NIH HHS P40 OD018537NINDS NIH HHS DP2 NS082127
6 · The paper itself

Abstract

Fluorescent protein tags have revolutionized cell and developmental biology, and in combination with binary expression systems they enable diverse tissue-specific studies of protein function. However these binary expression systems often do not recapitulate endogenous protein expression levels, localization, binding partners and/or developmental windows of gene expression. To address these limitations, we have developed a method called T-STEP (tissue-specific tagging of endogenous proteins) that allows endogenous loci to be tagged in a tissue specific manner. T-STEP uses a combination of efficient CRISPR/Cas9-enhanced gene targeting and tissue-specific recombinase-mediated tag swapping to temporally and spatially label endogenous proteins. We have employed this method to GFP tag OCRL (a phosphoinositide-5-phosphatase in the endocytic pathway) and Vps35 (a Parkinson's disease-implicated component of the endosomal retromer complex) in diverse Drosophila tissues including neurons, glia, muscles and hemocytes. Selective tagging of endogenous proteins allows, for the first time, cell type-specific live imaging and proteomics in complex tissues.

Indexed as

CRISPRDrosophilaGene targetingGolic+OCRLR recombinase/RippaseTissue-specific taggingVps35

Identifiers

PMID26700726
PMCPMC4728311
OpenAlexW2288206725

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.