Evidence map›Paper›PMID 26700722›Full record

ArticleBiology open2015

Automated image analysis reveals the dynamic 3-dimensional organization of multi-ciliary arrays.

Domenico F Galati, David S Abuin, Gabriel A Tauber, Andrew T Pham, Chad G Pearson

Abstract read
In one paragraph

Article in Biology open, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Big1 is a cell cycle regulator linking cell size to basal body number.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Journal of cell science · 2020
    Article
  10. Motile Cilia: Innovation and Insight From Ciliate Model Organisms.Frontiers in cell and developmental biology · 2019
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Domenico F GalatiDepartment of Cell and Developmental Biology, University of Colorado School of Medicine, 2801 East 17th Ave, Aurora, CO 80045-2537, USA Domenico.Galati@ucdenver.edu Chad.Pearson@ucdenver.edu.
David S AbuinDepartment of Cell and Developmental Biology, University of Colorado School of Medicine, 2801 East 17th Ave, Aurora, CO 80045-2537, USA.
Gabriel A TauberDepartment of Cell and Developmental Biology, University of Colorado School of Medicine, 2801 East 17th Ave, Aurora, CO 80045-2537, USA.
Andrew T PhamDepartment of Cell and Developmental Biology, University of Colorado School of Medicine, 2801 East 17th Ave, Aurora, CO 80045-2537, USA.
Chad G PearsonDepartment of Cell and Developmental Biology, University of Colorado School of Medicine, 2801 East 17th Ave, Aurora, CO 80045-2537, USA Domenico.Galati@ucdenver.edu Chad.Pearson@ucdenver.edu.

Funding

Mechanisms of centriole assembly and stabilityR01GM099820 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PEARSON, CHAD G · 2012 to 2020
$2.9M
NIGMS NIH HHS R01 GM099820
6 · The paper itself

Abstract

Multi-ciliated cells (MCCs) use polarized fields of undulating cilia (ciliary array) to produce fluid flow that is essential for many biological processes. Cilia are positioned by microtubule scaffolds called basal bodies (BBs) that are arranged within a spatially complex 3-dimensional geometry (3D). Here, we develop a robust and automated computational image analysis routine to quantify 3D BB organization in the ciliate, Tetrahymena thermophila. Using this routine, we generate the first morphologically constrained 3D reconstructions of Tetrahymena cells and elucidate rules that govern the kinetics of MCC organization. We demonstrate the interplay between BB duplication and cell size expansion through the cell cycle. In mutant cells, we identify a potential BB surveillance mechanism that balances large gaps in BB spacing by increasing the frequency of closely spaced BBs in other regions of the cell. Finally, by taking advantage of a mutant predisposed to BB disorganization, we locate the spatial domains that are most prone to disorganization by environmental stimuli. Collectively, our analyses reveal the importance of quantitative image analysis to understand the principles that guide the 3D organization of MCCs.

Indexed as

Automated image analysisBasal bodyCentrioleCiliaPoc1PolarityTetrahymena

Identifiers

PMID26700722
PMCPMC4728305

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.