Evidence map›Paper›PMID 26699904›Full record

ArticleThe Biochemical journal2016

CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress.

Louise V Holyoake, Stuart Hunt, Guido Sanguinetti, Gregory M Cook, Mark J Howard, Michelle L Rowe, Robert K Poole, Mark Shepherd

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Recent Advances in Structural Studies of CytochromeInternational journal of molecular sciences · 2022
    Review
  9. Article
  10. Impact of Hydrogen Sulfide on Mitochondrial and Bacterial Bioenergetics.International journal of molecular sciences · 2021
    Review
  11. Review
  12. Review
  13. Bacterial Oxidases of the CytochromeAntioxidants & redox signaling · 2021
    Review
  14. ROS Defense Systems and Terminal Oxidases in Bacteria.Antioxidants (Basel, Switzerland) · 2021
    Review
  15. Article
  16. CydDC functions as a cytoplasmic cystine reductase to sensitizeProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Bioenergetic Inhibitors: Antibiotic Efficacy and Mechanisms of Action inFrontiers in cellular and infection microbiology · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Louise V HolyoakeSchool of Biosciences, University of Kent, Canterbury CT2 7NJ, U.K.
Stuart HuntDepartment of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, U.K.
Guido SanguinettiSchool of Informatics, The University of Edinburgh, Informatics Forum, 10 Crichton Street, Edinburgh EH8 9AB, U.K.
Gregory M CookDepartment of Microbiology and Immunology, University of Otago, P.O. Box 56, 720 Cumberland Street, Dunedin 9054, New Zealand.
Mark J HowardSchool of Biosciences, University of Kent, Canterbury CT2 7NJ, U.K.
Michelle L RoweSchool of Biosciences, University of Kent, Canterbury CT2 7NJ, U.K.
Robert K PooleDepartment of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, U.K.
Mark ShepherdSchool of Biosciences, University of Kent, Canterbury CT2 7NJ, U.K. M.Shepherd@kent.ac.uk.
University of Otago · NZ

Funding

Biotechnology and Biological Sciences Research Council BB/C514174/1Biotechnology and Biological Sciences Research Council BB/F003463/1
6 · The paper itself

Abstract

The glutathione/cysteine exporter CydDC maintains redox balance in Escherichia coli. A cydD mutant strain was used to probe the influence of CydDC upon reduced thiol export, gene expression, metabolic perturbations, intracellular pH homoeostasis and tolerance to nitric oxide (NO). Loss of CydDC was found to decrease extracytoplasmic thiol levels, whereas overexpression diminished the cytoplasmic thiol content. Transcriptomic analysis revealed a dramatic up-regulation of protein chaperones, protein degradation (via phenylpropionate/phenylacetate catabolism), β-oxidation of fatty acids and genes involved in nitrate/nitrite reduction. (1)H NMR metabolomics revealed elevated methionine and betaine and diminished acetate and NAD(+) in cydD cells, which was consistent with the transcriptomics-based metabolic model. The growth rate and ΔpH, however, were unaffected, although the cydD strain did exhibit sensitivity to the NO-releasing compound NOC-12. These observations are consistent with the hypothesis that the loss of CydDC-mediated reductant export promotes protein misfolding, adaptations to energy metabolism and sensitivity to NO. The addition of both glutathione and cysteine to the medium was found to complement the loss of bd-type cytochrome synthesis in a cydD strain (a key component of the pleiotropic cydDC phenotype), providing the first direct evidence that CydDC substrates are able to restore the correct assembly of this respiratory oxidase. These data provide an insight into the metabolic flexibility of E. coli, highlight the importance of bacterial redox homoeostasis during nitrosative stress, and report for the first time the ability of periplasmic low molecular weight thiols to restore haem incorporation into a cytochrome complex.

Indexed as

ATP-Binding Cassette TransportersBiological TransportEnergy MetabolismEscherichia coliEscherichia coli ProteinsGene DeletionGene Expression Regulation, BacterialModels, BiologicalNitrosationOxidation-ReductionStress, PhysiologicalTranscription, GeneticATP-Binding Cassette TransportersCydC protein, E coliCydD protein, E coliEscherichia coli Proteinscysteinecytochromeglutathionenitric oxidenitrosative stressredox regulation

Identifiers

PMID26699904
PMCPMC4785604
OpenAlexW2216457154

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.