Evidence map›Paper›PMID 26699645›Full record

ArticleJournal of virology2015

Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase.

Nikki Dellas, Jamie C Snyder, Michael Dills, Sheena J Nicolay, Keshia M Kerchner, Susan K Brumfield, C Martin Lawrence, Mark J Young

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Viruses of theFrontiers in microbiology · 2023
    Review
  3. Article
  4. Review
  5. The enigmatic archaeal virosphere.Nature reviews. Microbiology · 2017
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Nikki DellasThermal Biology Institute, Montana State University, Bozeman, Montana, USA Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, Montana, USA CSIRO Land & Water, Acton, ACT, Australia.
Jamie C SnyderThermal Biology Institute, Montana State University, Bozeman, Montana, USA Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, Montana, USA.
Michael DillsThermal Biology Institute, Montana State University, Bozeman, Montana, USA Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, Montana, USA.
Sheena J NicolayThermal Biology Institute, Montana State University, Bozeman, Montana, USA Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, Montana, USA.
Keshia M KerchnerThermal Biology Institute, Montana State University, Bozeman, Montana, USA Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, Montana, USA.
Susan K BrumfieldThermal Biology Institute, Montana State University, Bozeman, Montana, USA Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, Montana, USA.
C Martin LawrenceThermal Biology Institute, Montana State University, Bozeman, Montana, USA Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA.
Mark J YoungThermal Biology Institute, Montana State University, Bozeman, Montana, USA Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, Montana, USA myoung@montana.edu.
Montana State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledSulfolobus turreted icosahedral virus (STIV), an archaeal virus that infects the hyperthermoacidophile Sulfolobus solfataricus, is one of the most well-studied viruses of the domain Archaea. STIV shares structural, morphological, and sequence similarities with viruses from other domains of life, all of which are thought to belong to the same viral lineage. Several of these common features include a conserved coat protein fold, an internal lipid membrane, and a DNA-packaging ATPase. B204 is the ATPase encoded by STIV and is thought to drive packaging of viral DNA during the replication process. Here, we report the crystal structure of B204 along with the biochemical analysis of B204 mutants chosen based on structural information and sequence conservation patterns observed among members of the same viral lineage and the larger FtsK/HerA superfamily to which B204 belongs. Both in vitro ATPase activity assays and transfection assays with mutant forms of B204 confirmed the essentiality of conserved and nonconserved positions. We also have identified two distinct particle morphologies during an STIV infection that differ in the presence or absence of the B204 protein. The biochemical and structural data presented here are not only informative for the STIV replication process but also can be useful in deciphering DNA-packaging mechanisms for other viruses belonging to this lineage. IMPORTANCE: STIV is a virus that infects a host from the domain Archaea that replicates in high-temperature, acidic environments. While STIV has many unique features, there exist several striking similarities between this virus and others that replicate in different environments and infect a broad range of hosts from Bacteria and Eukarya. Aside from structural features shared by viruses from this lineage, there exists a significant level of sequence similarity between the ATPase genes carried by these different viruses; this gene encodes an enzyme thought to provide energy that drives DNA packaging into the virion during infection. The experiments described here highlight the elements of this enzyme that are essential for proper function and also provide supporting evidence that B204 is present in the mature STIV virion.

Indexed as

DNA PackagingAdenosine TriphosphatasesCrystallography, X-RayDNA Mutational AnalysisDNA VirusesModels, MolecularProtein ConformationSulfolobus solfataricusViral ProteinsAdenosine TriphosphatasesViral Proteins

Identifiers

PMID26699645
PMCPMC4810673
OpenAlexW2277263366

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.