Evidence map›Paper›PMID 26699507›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Regulation of neural gene transcription by optogenetic inhibition of the RE1-silencing transcription factor.

Francesco Paonessa, Stefania Criscuolo, Silvio Sacchetti, Davide Amoroso, Helena Scarongella, Federico Pecoraro Bisogni, Emanuele Carminati, Giacomo Pruzzo, Luca Maragliano, Fabrizia Cesca and 1 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
8.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Towards translational optogenetics.Nature biomedical engineering · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. New epigenetic players in stroke pathogenesis: From non-coding RNAs to exosomal non-coding RNAs.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2021
    Review
  13. Article
  14. Article
  15. A light way for nuclear cell biologists.Journal of biochemistry · 2021
    Review
  16. Engineering an Allosteric Control of Protein Function.The journal of physical chemistry. B · 2021
    Review
  17. Photoreaction Mechanisms of Flavoprotein Photoreceptors and Their Applications.Advances in experimental medicine and biology · 2021
    Review
  18. Article
  19. Article
  20. ANeural plasticity · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Francesco PaonessaCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy; Department of Experimental Medicine, University of Genova, 16132 Genova, Italy.
Stefania CriscuoloCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy; Department of Experimental Medicine, University of Genova, 16132 Genova, Italy.
Silvio SacchettiCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy;
Davide AmorosoCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy;
Helena ScarongellaCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy;
Federico Pecoraro BisogniCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy; Department of Experimental Medicine, University of Genova, 16132 Genova, Italy.
Emanuele CarminatiCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy;
Giacomo PruzzoCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy;
Luca MaraglianoCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy;
Fabrizia CescaCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy; fabrizia.cesca@iit.it fabio.benfenati@iit.it.
Fabio BenfenatiCenter for Synaptic Neuroscience, Istituto Italiano di Tecnologia, 16132 Genova, Italy; Department of Experimental Medicine, University of Genova, 16132 Genova, Italy fabrizia.cesca@iit.it fabio.benfenati@iit.it.
Italian Institute of Technology · ITUniversity of Genoa · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Optogenetics provides new ways to activate gene transcription; however, no attempts have been made as yet to modulate mammalian transcription factors. We report the light-mediated regulation of the repressor element 1 (RE1)-silencing transcription factor (REST), a master regulator of neural genes. To tune REST activity, we selected two protein domains that impair REST-DNA binding or recruitment of the cofactor mSin3a. Computational modeling guided the fusion of the inhibitory domains to the light-sensitive Avena sativa light-oxygen-voltage-sensing (LOV) 2-phototrophin 1 (AsLOV2). By expressing AsLOV2 chimeras in Neuro2a cells, we achieved light-dependent modulation of REST target genes that was associated with an improved neural differentiation. In primary neurons, light-mediated REST inhibition increased Na(+)-channel 1.2 and brain-derived neurotrophic factor transcription and boosted Na(+) currents and neuronal firing. This optogenetic approach allows the coordinated expression of a cluster of genes impinging on neuronal activity, providing a tool for studying neuronal physiology and correcting gene expression changes taking place in brain diseases.

Indexed as

Gene Expression RegulationAnimalsAvenaCell Line, TumorChromatinDNAElectrophoretic Mobility Shift AssayMiceNeuronsOptogeneticsPlant ProteinsProtein BindingProtein Structure, TertiaryRE1-Silencing Transcription FactorRecombinant Fusion ProteinsRepressor ProteinsChromatinDNAPlant ProteinsRE1-Silencing Transcription FactorRecombinant Fusion ProteinsRepressor ProteinsAsLOV2gene transcriptionmolecular dynamicsoptogeneticsREST/NRSF

Identifiers

PMID26699507
PMCPMC4711829
OpenAlexW2198266139

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.