Evidence map›Paper›PMID 26699485›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Effects of aging on circadian patterns of gene expression in the human prefrontal cortex.

Cho-Yi Chen, Ryan W Logan, Tianzhou Ma, David A Lewis, George C Tseng, Etienne Sibille, Colleen A McClung

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 168 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
168citing papers in PubMed, 3 pooled it
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

168 citing papers in PubMed, 3 syntheses or guidelines pooled it, 284 citations in OpenAlex.

  1. Pooled it
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  14. NADAlzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Review
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  16. Human Cerebral Blood Flow Activity with Diurnal Variation Differentially Correlated with the Suprachiasmatic Nucleus.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article
  17. Post-Translational Modifications in Animal Circadian Clocks.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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108 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Cho-Yi ChenDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA 15261;
Ryan W LoganDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213;
Tianzhou MaDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA 15261;
David A LewisDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213;
George C TsengDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA 15261;
Etienne SibilleDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213; Campbell Family Mental Health Research Institute of Centre for Addiction and Mental Health (CAMH), Toronto, ON, Canada M6J 1H4; Department of Psychiatry, University of Toronto, Toronto, ON, Canada M5T 1R8; Department of Pharmacology and Toxicology, University of Toronto, Toronto, ON, Canada M5S 1A8.
Colleen A McClungDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213; mcclungca@upmc.edu.
University of Pittsburgh · US

Funding

Statistics and Data Management CoreP50MH103204 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI OLSON, CARL ROGER · 2014 to 2018
$10.8M
Training in the Neurobiology of Neurological DiseaseT32NS086749 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Omar El Gharbawie, REBECCA P SEAL · 2014 to 2026
$4.8M
Transcriptome analysis in major depressionR01MH077159 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MCCLUNG, COLLEEN A, SIBILLE, ETIENNE L · 2007 to 2015
$3.2M
Molecular Aging of the Human Brain: Genetic Modulation and Functional OutcomesR01MH093723 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SIBILLE, ETIENNE L · 2011 to 2015
$2.6M
NIMH NIH HHS MH103204NIMH NIH HHS P50 MH103204NIMH NIH HHS R01 MH077159NIMH NIH HHS R01MH077159NIMH NIH HHS R01 MH093723NIMH NIH HHS R01MH093723NINDS NIH HHS T32 NS086749
6 · The paper itself

Abstract

With aging, significant changes in circadian rhythms occur, including a shift in phase toward a "morning" chronotype and a loss of rhythmicity in circulating hormones. However, the effects of aging on molecular rhythms in the human brain have remained elusive. Here, we used a previously described time-of-death analysis to identify transcripts throughout the genome that have a significant circadian rhythm in expression in the human prefrontal cortex [Brodmann's area 11 (BA11) and BA47]. Expression levels were determined by microarray analysis in 146 individuals. Rhythmicity in expression was found in ∼ 10% of detected transcripts (P < 0.05). Using a metaanalysis across the two brain areas, we identified a core set of 235 genes (q < 0.05) with significant circadian rhythms of expression. These 235 genes showed 92% concordance in the phase of expression between the two areas. In addition to the canonical core circadian genes, a number of other genes were found to exhibit rhythmic expression in the brain. Notably, we identified more than 1,000 genes (1,186 in BA11; 1,591 in BA47) that exhibited age-dependent rhythmicity or alterations in rhythmicity patterns with aging. Interestingly, a set of transcripts gained rhythmicity in older individuals, which may represent a compensatory mechanism due to a loss of canonical clock function. Thus, we confirm that rhythmic gene expression can be reliably measured in human brain and identified for the first time (to our knowledge) significant changes in molecular rhythms with aging that may contribute to altered cognition, sleep, and mood in later life.

Indexed as

Transcription, GeneticAdolescentAdultAgedAged, 80 and overAgingCircadian RhythmGene Expression RegulationGenome, HumanHumansMaleMiddle AgedOligonucleotide Array Sequence AnalysisPrefrontal CortexSleepYoung Adultagingcircadian rhythmsgene expressionpostmortemprefrontal cortex

Identifiers

PMID26699485
PMCPMC4711850
OpenAlexW2217406169

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.