Evidence map›Paper›PMID 26699458›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Surface expression, peptide repertoire, and thermostability of chicken class I molecules correlate with peptide transporter specificity.

Clive A Tregaskes, Michael Harrison, Anna K Sowa, Andy van Hateren, Lawrence G Hunt, Olli Vainio, Jim Kaufman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Clive A TregaskesDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom;
Michael HarrisonDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom;
Anna K SowaDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom;
Andy van HaterenDivision of Immunology, Institute for Animal Health, Compton RG20 7NN, United Kingdom;
Lawrence G HuntDivision of Immunology, Institute for Animal Health, Compton RG20 7NN, United Kingdom;
Olli VainioBasel Institute for Immunology, Basel CH-4005, Switzerland; Department of Medical Microbiology, University of Oulu and Nordlab, Oulu FI-90014, Finland;
Jim KaufmanDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom; Division of Immunology, Institute for Animal Health, Compton RG20 7NN, United Kingdom; Basel Institute for Immunology, Basel CH-4005, Switzerland; Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, United Kingdom jfk31@cam.ac.uk.
University of Cambridge · GBThe Pirbright Institute · GBNordLab · FI

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust 089305
6 · The paper itself

Abstract

The chicken major histocompatibility complex (MHC) has strong genetic associations with resistance and susceptibility to certain infectious pathogens. The cell surface expression level of MHC class I molecules varies as much as 10-fold between chicken haplotypes and is inversely correlated with diversity of peptide repertoire and with resistance to Marek's disease caused by an oncogenic herpesvirus. Here we show that the average thermostability of class I molecules isolated from cells also varies, being higher for high-expressing MHC haplotypes. However, we find roughly the same amount of class I protein synthesized by high- and low-expressing MHC haplotypes, with movement to the cell surface responsible for the difference in expression. Previous data show that chicken TAP genes have high allelic polymorphism, with peptide translocation specific for each MHC haplotype. Here we use assembly assays with peptide libraries to show that high-expressing B15 class I molecules can bind a much wider variety of peptides than are found on the cell surface, with the B15 TAPs restricting the peptides available. In contrast, the translocation specificity of TAPs from the low-expressing B21 haplotype is even more permissive than the promiscuous binding shown by the dominantly expressed class I molecule. B15/B21 heterozygote cells show much greater expression of B15 class I molecules than B15/B15 homozygote cells, presumably as a result of receiving additional peptides from the B21 TAPs. Thus, chicken MHC haplotypes vary in several correlated attributes, with the most obvious candidate linking all these properties being molecular interactions within the peptide-loading complex (PLC).

Indexed as

TemperatureAmino Acid SequenceAnimalsbeta 2-MicroglobulinBiological TransportCell MembraneChickensEpitopesErythrocytesHaplotypesHeterozygoteHistocompatibility Antigens Class IHomozygoteMembrane Transport ProteinsMolecular Sequence DataPeptidesbeta 2-MicroglobulinEpitopesHistocompatibility Antigens Class IMembrane Transport Proteinspeptide permeasePeptidesABC transporterheterozygous advantageoverdominancepermissiverestrictive

Identifiers

PMID26699458
PMCPMC4725490
OpenAlexW2197881120

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.