Evidence map›Paper›PMID 26699139›Full record

ArticleCurrent genetics2016

Ultrastructural features of the early secretory pathway in Trichoderma reesei.

Marko Nykänen, Debra Birch, Robyn Peterson, Hong Yu, Liisa Kautto, Anna Gryshyna, Junior Te'o, Helena Nevalainen

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Article in Current genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  6. Regulation of the fungal secretome.Current genetics · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Marko NykänenDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
Debra BirchMicroscopy Unit, Faculty of Science, Macquarie University, Sydney, NSW, 2109, Australia.
Robyn PetersonDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
Hong YuDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
Liisa KauttoDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
Anna GryshynaDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
Junior Te'oDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
Helena NevalainenDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia. helena.nevalainen@mq.edu.au.
Macquarie University · AUMillennium Institute · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have systematically analysed the ultrastructure of the early secretory pathway in the Trichoderma reesei hyphae in the wild-type QM6a, cellulase-overexpressing Rut-C30 strain and a Rut-C30 transformant BV47 overexpressing a recombinant BiP1-VenusYFP fusion protein with an endoplasmic reticulum (ER) retention signal. The hyphae were studied after 24 h of growth using transmission electron microscopy, confocal microscopy and quantitative stereological techniques. All three strains exhibited different spatial organisation of the ER at 24 h in both a cellulase-inducing medium and a minimal medium containing glycerol as a carbon source (non-cellulase-inducing medium). The wild-type displayed a number of ER subdomains including parallel tubular/cisternal ER, ER whorls, ER-isolation membrane complexes with abundant autophagy vacuoles and dense bodies. Rut-C30 and its transformant BV47 overexpressing the BiP1-VenusYFP fusion protein also contained parallel tubular/cisternal ER, but no ER whorls; also, there were very few autophagy vacuoles and an increasing amount of punctate bodies where particularly the recombinant BiP1-VenusYFP fusion protein was localised. The early presence of distinct strain-specific features such as the dominance of ER whorls in the wild type and tub/cis ER in Rut-C30 suggests that these are inherent traits and not solely a result of cellular response mechanisms by the high secreting mutant to protein overload.

Indexed as

Secretory PathwayAutophagyEndoplasmic ReticulumImmunohistochemistryMicroscopy, ConfocalMicroscopy, Electron, TransmissionTrichodermaEarly secretory compartmentER subdomainsMorphometryStereologyTEMTrichoderma reesei

Identifiers

PMID26699139
OpenAlexW2215983096

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.