Evidence map›Paper›PMID 26698166›Full record

ArticleEMBO reports2016

Mechanism governing heme synthesis reveals a GATA factor/heme circuit that controls differentiation.

Nobuyuki Tanimura, Eli Miller, Kazuhiko Igarashi, David Yang, Judith N Burstyn, Colin N Dewey, Emery H Bresnick

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. A reversible feedback mechanism regulating mitochondrial heme synthesis.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Erythropoiesis: insights from a genomic perspective.Experimental & molecular medicine · 2024
    Review
  8. Review
  9. Key GenesGenes · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Heme as a differentiation-regulatory transcriptional cofactor.International journal of hematology · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Nobuyuki TanimuraDepartment of Cell and Regenerative Biology, UW-Madison Blood Research Program, Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
Eli MillerDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Kazuhiko IgarashiDepartment of Biochemistry, Tohoku University School of Medicine, Sendai, Japan.
David YangDepartment of Pathology, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.
Judith N BurstynDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Colin N DeweyDepartment of Biostatistics and Medical Informatics, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA ehbresni@wisc.edu colin.dewey@wisc.edu.
Emery H BresnickDepartment of Cell and Regenerative Biology, UW-Madison Blood Research Program, Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA ehbresni@wisc.edu colin.dewey@wisc.edu.
University of Wisconsin–Madison · USTohoku University · JPUniversity of Wisconsin Carbone Cancer Center · US

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI AMY TRENTHAM-DIETZ · 1985 to 2026
$142.6M
Transcriptional Control of Hemoglobin Synthesis and Erythrocyte DevelopmentR01DK050107 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Emery H. Bresnick · 1996 to 2026
$6.1M
Transcriptional Control of Hemoglobin SynthesisR37DK050107 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI BRESNICK, EMERY H · 2011 to 2020
$3.5M
Statistical Methods For Annotating Repetitive Genomic Regions Through ENCODE-deriU01HG007019 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI BRESNICK, EMERY H, DEWEY, COLIN NOEL · 2012 to 2015
$1.5M
NCI NIH HHS P30 CA014520NHGRI NIH HHS HG007019NHGRI NIH HHS U01 HG007019NIDDK NIH HHS DK50107NIDDK NIH HHS R01 DK050107NIDDK NIH HHS R37 DK050107
6 · The paper itself

Abstract

Metal ion-containing macromolecules have fundamental roles in essentially all biological processes throughout the evolutionary tree. For example, iron-containing heme is a cofactor in enzyme catalysis and electron transfer and an essential hemoglobin constituent. To meet the intense demand for hemoglobin assembly in red blood cells, the cell type-specific factor GATA-1 activates transcription of Alas2, encoding the rate-limiting enzyme in heme biosynthesis, 5-aminolevulinic acid synthase-2 (ALAS-2). Using genetic editing to unravel mechanisms governing heme biosynthesis, we discovered a GATA factor- and heme-dependent circuit that establishes the erythroid cell transcriptome. CRISPR/Cas9-mediated ablation of two Alas2 intronic cis elements strongly reduces GATA-1-induced Alas2 transcription, heme biosynthesis, and surprisingly, GATA-1 regulation of other vital constituents of the erythroid cell transcriptome. Bypassing ALAS-2 function in Alas2 cis element-mutant cells by providing its catalytic product 5-aminolevulinic acid rescues heme biosynthesis and the GATA-1-dependent genetic network. Heme amplifies GATA-1 function by downregulating the heme-sensing transcriptional repressor Bach1 and via a Bach1-insensitive mechanism. Through this dual mechanism, heme and a master regulator collaborate to orchestrate a cell type-specific transcriptional program that promotes cellular differentiation.

Indexed as

Gene Regulatory NetworksHematopoiesis5-Aminolevulinate SynthetaseAmino Acid SequenceAnimalsBasic-Leucine Zipper Transcription FactorsCHO CellsCricetinaeCricetulusErythroid CellsGATA1 Transcription FactorHemeMiceMolecular Sequence DataTranscriptome5-Aminolevulinate SynthetaseALAS2 protein, mouseBach1 protein, mouseBasic-Leucine Zipper Transcription FactorsGATA1 Transcription FactorHemeBach1GATA factorhemenetworktranscriptome

Identifiers

PMID26698166
PMCPMC5290819
OpenAlexW2201401723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.