Evidence map›Paper›PMID 26697376›Full record

ArticleGenomics data2015

Assessment of microRNA expression in mouse epididymal epithelial cells and spermatozoa by next generation sequencing.

Amanda L Anderson, Simone J Stanger, Bettina P Mihalas, Sonika Tyagi, Janet E Holt, Eileen A McLaughlin, Brett Nixon

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. MicroRNA In Situ Hybridization in Paraffin-Embedded Cultured Cells.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  7. Article
  8. Analysis of Epididymal Protein Synthesis and Secretion.Journal of visualized experiments : JoVE · 2018
    Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Amanda L AndersonReproductive Science Group, School of Environmental and Life Sciences, Faculty of Science and IT, University of Newcastle, Callaghan, New South Wales, Australia.
Simone J StangerReproductive Science Group, School of Environmental and Life Sciences, Faculty of Science and IT, University of Newcastle, Callaghan, New South Wales, Australia.
Bettina P MihalasReproductive Science Group, School of Environmental and Life Sciences, Faculty of Science and IT, University of Newcastle, Callaghan, New South Wales, Australia.
Sonika TyagiAustralian Genome Research Facility Ltd, The Walter and Eliza Hall Institute, Parkville, Victoria, Australia.
Janet E HoltSchool of Biomedical Sciences and Pharmacy, Faculty of Health and Medicine, University of Newcastle, Callaghan, New South Wales, Australia.
Eileen A McLaughlinReproductive Science Group, School of Environmental and Life Sciences, Faculty of Science and IT, University of Newcastle, Callaghan, New South Wales, Australia.
Brett NixonReproductive Science Group, School of Environmental and Life Sciences, Faculty of Science and IT, University of Newcastle, Callaghan, New South Wales, Australia.
University of Newcastle Australia · AUWalter and Eliza Hall Institute of Medical Research · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mammalian epididymis is a highly specialized region of the male reproductive tract that is lined with a continuous layer of epithelial cells that display a remarkable level of regionalized secretory and absorptive activity. The luminal environment created by this combined secretory and absorptive activity is directly responsible for promoting the functional maturation of spermatozoa and their maintenance in a quiescent and viable state prior to ejaculation. This study was designed to identify the complement of microRNAs (miRNAs) that are expressed within the mouse epididymal epithelial cells and the maturing populations of spermatozoa. Through the use of Next Generation Sequencing technology we have demonstrated that both epididymal epithelial cells and spermatozoa harbour a complex repertoire of miRNAs that have substantially different expression profiles along the length of the tract. These data, deposited in the Gene Expression Omnibus (GEO) with the accession numbers GSE70197 and GSE70198, afford valuable insight into the post-transcriptional control of gene expression within the epididymis and provide the first evidence for the dynamic transformation of the miRNA content of maturing sperm cells. Ultimately such information promises to inform our understanding of the aetiology of male infertility. Herein we provide a detailed description of the methodology used to generate these important data.

Identifiers

PMID26697376
PMCPMC4664737
OpenAlexW1945437025

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.