Evidence map›Paper›PMID 26697113›Full record

ArticleBiotechnology for biofuels2015

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis.

Avinash C Srivastava, Fang Chen, Tui Ray, Sivakumar Pattathil, Maria J Peña, Utku Avci, Hongjia Li, David V Huhman, Jason Backe, Breeanna Urbanowicz and 9 more

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Engineered reduction of S-adenosylmethionine alters lignin in sorghum.Biotechnology for biofuels and bioproducts · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. SorghumGenes · 2021
    Article
  9. Article
  10. SilencingFrontiers in plant science · 2020
    Article
  11. Article
  12. Combining loss of function ofBiotechnology for biofuels · 2019
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Simultaneous Downregulation ofFrontiers in plant science · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Avinash C SrivastavaPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401 USA ; BioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA.
Fang ChenBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Department of Biological Sciences, University of North Texas, Denton, TX 76203 USA.
Tui RayPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401 USA.
Sivakumar PattathilBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA ; Department of Plant Biology, University of Georgia, Athens, GA 30602 USA.
Maria J PeñaBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA.
Utku AvciBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA ; Department of Plant Biology, University of Georgia, Athens, GA 30602 USA.
Hongjia LiBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Center for Environmental Research and Technology (CE-CERT), Bourns College of Engineering, University of California, Riverside, CA 92507 USA.
David V HuhmanPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401 USA.
Jason BackeBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA.
Breeanna UrbanowiczBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA.
Jeffrey S MillerComplex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA.
Mohamed BedairPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401 USA.
Charles E WymanBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Center for Environmental Research and Technology (CE-CERT), Bourns College of Engineering, University of California, Riverside, CA 92507 USA.
Lloyd W SumnerPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401 USA.
William S YorkBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA ; Department of Plant Biology, University of Georgia, Athens, GA 30602 USA.
Michael G HahnBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA ; Department of Plant Biology, University of Georgia, Athens, GA 30602 USA.
Richard A DixonBioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA ; Department of Biological Sciences, University of North Texas, Denton, TX 76203 USA.
Elison B BlancaflorPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401 USA ; BioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA.
Yuhong TangPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401 USA ; BioEnergy Science Center, United States Department of Energy, Oak Ridge, TN 37831 USA.
United States Department of Energy · USNoble Research Institute · USUniversity of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOne-carbon (C1) metabolism is important for synthesizing a range of biologically important compounds that are essential for life. In plants, the C1 pathway is crucial for the synthesis of a large number of secondary metabolites, including lignin. Tetrahydrofolate and its derivatives, collectively referred to as folates, are crucial co-factors for C1 metabolic pathway enzymes. Given the link between the C1 and phenylpropanoid pathways, we evaluated whether folylpolyglutamate synthetase (FPGS), an enzyme that catalyzes the addition of a glutamate tail to folates to form folylpolyglutamates, can be a viable target for reducing cell wall recalcitrance in plants.

resultsConsistent with its role in lignocellulosic formation, FPGS1 was preferentially expressed in vascular tissues. Total lignin was low in fpgs1 plants leading to higher saccharification efficiency of the mutant. The decrease in total lignin in fpgs1 was mainly due to lower guaiacyl (G) lignin levels. Glycome profiling revealed subtle alterations in the cell walls of fpgs1. Further analyses of hemicellulosic polysaccharides by NMR showed that the degree of methylation of 4-O-methyl glucuronoxylan was reduced in the fpgs1 mutant. Microarray analysis and real-time qRT-PCR revealed that transcripts of a number of genes in the C1 and lignin pathways had altered expression in fpgs1 mutants. Consistent with the transcript changes of C1-related genes, a significant reduction in S-adenosyl-l-methionine content was detected in the fpgs1 mutant. The modified expression of the various methyltransferases and lignin-related genes indicate possible feedback regulation of C1 pathway-mediated lignin biosynthesis.

conclusionsOur observations provide genetic and biochemical support for the importance of folylpolyglutamates in the lignocellulosic pathway and reinforces previous observations that targeting a single FPGS isoform for down-regulation leads to reduced lignin in plants. Because fpgs1 mutants had no dramatic defects in above ground biomass, selective down-regulation of individual components of C1 metabolism is an approach that should be explored further for the improvement of lignocellulosic feedstocks.

Indexed as

ArabidopsisBioenergyC1 metabolismCell-wall recalcitranceFolylpolyglutamate synthetaseFPGS1Lignin

Identifiers

PMID26697113
PMCPMC4687376
OpenAlexW2199275529

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.