Evidence map›Paper›PMID 26694616›Full record

ArticleThe Journal of biological chemistry2016

Molecular Basis of Enhanced Activity in Factor VIIa-Trypsin Variants Conveys Insights into Tissue Factor-mediated Allosteric Regulation of Factor VIIa Activity.

Anders B Sorensen, Jesper J Madsen, L Anders Svensson, Anette A Pedersen, Henrik Østergaard, Michael T Overgaard, Ole H Olsen, Prafull S Gandhi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. An RNA aptamer exploits exosite-dependent allostery to achieve specific inhibition of coagulation factor IXa.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Anders B SorensenFrom Global Research, Novo Nordisk A/S, 2760 Måløv, Denmark, Department of Chemistry and Bioscience, Aalborg University, 9220 Aalborg, Denmark, and.
Jesper J MadsenFrom Global Research, Novo Nordisk A/S, 2760 Måløv, Denmark, Department of Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
L Anders SvenssonFrom Global Research, Novo Nordisk A/S, 2760 Måløv, Denmark.
Anette A PedersenFrom Global Research, Novo Nordisk A/S, 2760 Måløv, Denmark.
Henrik ØstergaardFrom Global Research, Novo Nordisk A/S, 2760 Måløv, Denmark.
Michael T OvergaardDepartment of Chemistry and Bioscience, Aalborg University, 9220 Aalborg, Denmark, and.
Ole H OlsenFrom Global Research, Novo Nordisk A/S, 2760 Måløv, Denmark.
Prafull S GandhiFrom Global Research, Novo Nordisk A/S, 2760 Måløv, Denmark, pgan@novonordisk.com.
Novo Nordisk (Denmark) · DKAalborg University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The complex of coagulation factor VIIa (FVIIa), a trypsin-like serine protease, and membrane-bound tissue factor (TF) initiates blood coagulation upon vascular injury. Binding of TF to FVIIa promotes allosteric conformational changes in the FVIIa protease domain and improves its catalytic properties. Extensive studies have revealed two putative pathways for this allosteric communication. Here we provide further details of this allosteric communication by investigating FVIIa loop swap variants containing the 170 loop of trypsin that display TF-independent enhanced activity. Using x-ray crystallography, we show that the introduced 170 loop from trypsin directly interacts with the FVIIa active site, stabilizing segment 215-217 and activation loop 3, leading to enhanced activity. Molecular dynamics simulations and novel fluorescence quenching studies support that segment 215-217 conformation is pivotal to the enhanced activity of the FVIIa variants. We speculate that the allosteric regulation of FVIIa activity by TF binding follows a similar path in conjunction with protease domain N terminus insertion, suggesting a more complete molecular basis of TF-mediated allosteric enhancement of FVIIa activity.

Indexed as

Models, MolecularAllosteric RegulationCatalytic DomainCrystallography, X-RayEnzyme StabilityFactor VIIaHumansKineticsMolecular Dynamics SimulationMutationPeptide FragmentsProtein ConformationProtein Interaction Domains and MotifsProtein UnfoldingRecombinant Fusion ProteinsRecombinant ProteinsFactor VIIaPeptide FragmentsRecombinant Fusion Proteinsrecombinant FVIIaRecombinant ProteinsThromboplastinTrypsinallosteric regulationcoagulation factormolecular dynamicsserine proteasex-ray crystallography

Identifiers

PMID26694616
PMCPMC4813490
OpenAlexW2218756848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.