Evidence map›Paper›PMID 26694141›Full record

ArticleMolecular bioSystems2016

Neurospora crassa transcriptomics reveals oxidative stress and plasma membrane homeostasis biology genes as key targets in response to chitosan.

Federico Lopez-Moya, David Kowbel, Maria José Nueda, Javier Palma-Guerrero, N Louise Glass, Luis Vicente Lopez-Llorca

Open access · greenAbstract read
In one paragraph

Article in Molecular bioSystems, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 38 citations in OpenAlex.

  1. Staurosporine as an Antifungal Agent.International journal of molecular sciences · 2025
    Review
  2. Article
  3. Article
  4. Review
  5. Strain Degeneration inJournal of fungi (Basel, Switzerland) · 2021
    Article
  6. Article
  7. Review
  8. Molecular Mechanisms of Chitosan Interactions with Fungi and Plants.International journal of molecular sciences · 2019
    Review
  9. Identification and manipulation ofBiotechnology for biofuels · 2019
    Article
  10. Article
  11. Regulated Forms of Cell Death in Fungi.Frontiers in microbiology · 2017
    Review
  12. Journal of fungi (Basel, Switzerland) · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Federico Lopez-MoyaLaboratory of Plant Pathology, Multidisciplinary Institute for Environmental Studies (MIES) Ramon Margalef, Department of Marine Sciences and Applied Biology, University of Alicante, E-03080 Alicante, Spain. federico.lopez@ua.es lv.lopez@ua.es.
David KowbelDepartment of Plant and Microbial Biology, University of California, Berkeley CA, 94720-3120 USA. djkowbel@berkeley.edu lglass@berkeley.edu.
Maria José NuedaStatistics and Operation Research Department, University of Alicante, E-03080 Alicante, Spain. mj.nueda@ua.es.
Javier Palma-GuerreroDepartment of Plant and Microbial Biology, University of California, Berkeley CA, 94720-3120 USA. djkowbel@berkeley.edu lglass@berkeley.edu.
N Louise GlassDepartment of Plant and Microbial Biology, University of California, Berkeley CA, 94720-3120 USA. djkowbel@berkeley.edu lglass@berkeley.edu.
Luis Vicente Lopez-LlorcaLaboratory of Plant Pathology, Multidisciplinary Institute for Environmental Studies (MIES) Ramon Margalef, Department of Marine Sciences and Applied Biology, University of Alicante, E-03080 Alicante, Spain. federico.lopez@ua.es lv.lopez@ua.es.
Berkeley College · USUniversity of Alicante · ES

Funding

ANALYSIS OF PROGRAMMED CELL DEATH IN FILAMENTOUS FUNGIR01GM060468 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI GLASS, N LOUISE · 2000 to 2014
$3.6M
NIGMS NIH HHS GM060468NIGMS NIH HHS R01 GM060468
6 · The paper itself

Abstract

Chitosan is a natural polymer with antimicrobial activity. Chitosan causes plasma membrane permeabilization and induction of intracellular reactive oxygen species (ROS) in Neurospora crassa. We have determined the transcriptional profile of N. crassa to chitosan and identified the main gene targets involved in the cellular response to this compound. Global network analyses showed membrane, transport and oxidoreductase activity as key nodes affected by chitosan. Activation of oxidative metabolism indicates the importance of ROS and cell energy together with plasma membrane homeostasis in N. crassa response to chitosan. Deletion strain analysis of chitosan susceptibility pointed NCU03639 encoding a class 3 lipase, involved in plasma membrane repair by lipid replacement, and NCU04537 a MFS monosaccharide transporter related to assimilation of simple sugars, as main gene targets of chitosan. NCU10521, a glutathione S-transferase-4 involved in the generation of reducing power for scavenging intracellular ROS is also a determinant chitosan gene target. Ca(2+) increased tolerance to chitosan in N. crassa. Growth of NCU10610 (fig 1 domain) and SYT1 (a synaptotagmin) deletion strains was significantly increased by Ca(2+) in the presence of chitosan. Both genes play a determinant role in N. crassa membrane homeostasis. Our results are of paramount importance for developing chitosan as an antifungal.

Indexed as

Oxidative StressAntifungal AgentsCalciumCell MembraneChitosanFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalGene OntologyGenes, FungalHomeostasisMicrobial Sensitivity TestsMolecular Sequence AnnotationNeurospora crassaOxidation-ReductionReactive Oxygen SpeciesAntifungal AgentsCalciumChitosanFungal ProteinsReactive Oxygen Species

Identifiers

PMID26694141
PMCPMC4729629
OpenAlexW2184641678

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.