Evidence map›Paper›PMID 26691890›Full record

ArticleThe Journal of clinical endocrinology and metabolism2016

The HABP2 G534E variant is an unlikely cause of familial non-medullary thyroid cancer.

Ruta Sahasrabudhe, Jacob Stultz, John Williamson, Paul Lott, Ana Estrada, Mabel Bohorquez, Claire Palles, Guadalupe Polanco-Echeverry, Emma Jaeger, Lynn Martin and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical endocrinology and metabolism, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Genetic susceptibility to hereditary non-medullary thyroid cancer.Hereditary cancer in clinical practice · 2022
    Review
  4. Review
  5. Article
  6. BROX haploinsufficiency in familial nonmedullary thyroid cancer.Journal of endocrinological investigation · 2021
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Genes · 2019
    Article
  12. Review
  13. Article
  14. The p.G534E variant ofOncotarget · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. The impact of family history on non-medullary thyroid cancer.European journal of surgical oncology : the journal of the European Society of Surgical Oncology and the British Association of Surgical Oncology · 2016
    Review
  19. Article
  20. RE: HABP2 G534E Mutation in Familial Nonmedullary Thyroid Cancer.Journal of the National Cancer Institute · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Ruta SahasrabudheGenome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, USA.
Jacob StultzGenome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, USA.
John WilliamsonGenome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, USA.
Paul LottGenome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, USA.
Ana EstradaGrupo de Citogenética, Filogenia y Evolución de Poblaciones, Facultades de Ciencias y Facultad de Ciencias de la Salud, Universidad del Tolima, Ibagué, Colombia.
Mabel BohorquezGrupo de Citogenética, Filogenia y Evolución de Poblaciones, Facultades de Ciencias y Facultad de Ciencias de la Salud, Universidad del Tolima, Ibagué, Colombia.
Claire PallesWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Guadalupe Polanco-EcheverryGenome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, USA.
Emma JaegerWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Lynn MartinWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Maria Magdalena EcheverryGrupo de Citogenética, Filogenia y Evolución de Poblaciones, Facultades de Ciencias y Facultad de Ciencias de la Salud, Universidad del Tolima, Ibagué, Colombia.
Ian TomlinsonWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Luis G Carvajal-CarmonaGenome Center and Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, USA.
TCUKIN
University of California, Davis · USUniversity of Tolima · COCentre for Human Genetics · GB

Funding

UC Davis Paul Calabresi K12 Clinical Oncology Research Career Development ProgramK12CA138464 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BIRKELAND, ANDREW CHARLES, LARA, PRIMO N. · 2011 to 2025
$11.4M
INVESTIGATOR DEVELOPMENT COREP30AG043097 · NIA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI HINTON, WALTER LADSON · 2012 to 2017
$2.9M
Medical Research Council G1001799Medical Research Council MR/N01104X/1NCI NIH HHS K12 CA138464NIA NIH HHS P30 AG043097Wellcome Trust
6 · The paper itself

Abstract

contextA recent study reported the non-synonymous G534E (rs7080536, allele A) variant in the HABP2 gene as causal in familial non-medullary thyroid cancer (NMTC).

objectiveThe objective of this study was to evaluate the causality of HABP2 G534E in the TCUKIN study, a multi-center population based study of NMTC cases from the British Isles. DESIGN AND

settingA case-control analysis of rs7080536 genotypes was performed using 2,105 TCUKIN cases and 5,172 UK controls.

participantsCases comprised 2,105 NMTC cases. Patients sub-groups with papillary (N=1,056), follicular (N=691) and Hurthle cell (N=86) TC cases were studied separately. Controls comprised 5,172 individuals from the 1958 Birth Cohort (58C) and the National Blood Donor Service (NBS) study. The controls had previously been genotyped using genome-wide SNP arrays by the Wellcome Trust Case Control Consortium study. OUTCOME: Measures: Association between HABP2 G534E (rs7080536A) and NMTC risk was evaluated using logistic regression.

resultsThe frequency of HABP2 G534E was 4.2% in cases and 4.6% in controls. We did not detect an association between this variant and NMTC risk (OR=0.896, 95% CI: 0.746-1.071, P=0.233). We also failed to detect an association between HABP2 G534E and cases with papillary (1056 cases, G534E frequency= 3.5%, OR=0.74, P=0.017), follicular (691 cases, G534E frequency= 4.7%, OR=1.00, P=1.000) or Hurthle cell (86 cases, G534E frequency= 6.3%, OR=1.40, P=0.279) histology.

conclusionsWe found that HABP2 G534E is a low-to-moderate frequency variant in the British Isles and failed to detect an association with NMTC risk, independent of histological type. Hence, our study does not implicate HABP2 G534E or a correlated polymorphism in familial NMTC and additional data are required before using this variant in NMTC risk assessment.

Identifiers

PMID26691890
PMCPMC4803181
OpenAlexW2209145797

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.