Evidence map›Paper›PMID 26691352›Full record

ArticleBMC genomics2015

Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntington's disease are not reflected in mutant Huntingtin inclusion prevalence.

Zubeyde Bayram-Weston, Timothy C Stone, Peter Giles, Linda Elliston, Nari Janghra, Gemma V Higgs, Peter A Holmans, Stephen B Dunnett, Simon P Brooks, Lesley Jones

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Zubeyde Bayram-WestonBrain Research Group, School of Bioscience, Cardiff University, Cardiff, CF10 4AX, UK. bayram-westonz@cf.ac.uk.
Timothy C StoneMRC Centre for Neuropsychiatric Genetics and Genomics, School of Medicine, Cardiff University, Cardiff, CF24 4HQ, UK. stonetc@cf.ac.uk.
Peter GilesMRC Centre for Neuropsychiatric Genetics and Genomics, School of Medicine, Cardiff University, Cardiff, CF24 4HQ, UK. gilespj@cf.ac.uk.
Linda EllistonMRC Centre for Neuropsychiatric Genetics and Genomics, School of Medicine, Cardiff University, Cardiff, CF24 4HQ, UK. ellistonla@cf.ac.uk.
Nari JanghraBrain Research Group, School of Bioscience, Cardiff University, Cardiff, CF10 4AX, UK. n.janghra@ucl.ac.uk.
Gemma V HiggsBrain Research Group, School of Bioscience, Cardiff University, Cardiff, CF10 4AX, UK. pduck.gemgem@googlemail.com.
Peter A HolmansMRC Centre for Neuropsychiatric Genetics and Genomics, School of Medicine, Cardiff University, Cardiff, CF24 4HQ, UK. holmanspa@cf.ac.uk.
Stephen B DunnettBrain Research Group, School of Bioscience, Cardiff University, Cardiff, CF10 4AX, UK. dunnettsb@cf.ac.uk.
Simon P BrooksBrain Research Group, School of Bioscience, Cardiff University, Cardiff, CF10 4AX, UK. brookssp@cf.ac.uk.
Lesley JonesMRC Centre for Neuropsychiatric Genetics and Genomics, School of Medicine, Cardiff University, Cardiff, CF24 4HQ, UK. jonesl1@cf.ac.uk.
Cardiff University · GB

Funding

CIHRMedical Research Council MR/L010305/1
6 · The paper itself

Abstract

backgroundThe YAC128 model of Huntington's disease (HD) shows substantial deficits in motor, learning and memory tasks and alterations in its transcriptional profile. We examined the changes in the transcriptional profile in the YAC128 mouse model of HD at 6, 12 and 18 months and compared these with those seen in other models and human HD caudate.

resultsDifferential gene expression by genotype showed that genes related to neuronal function, projection outgrowth and cell adhesion were altered in expression. A Time-course ANOVA revealed that genes downregulated with increased age in wild-type striata were likely to be downregulated in the YAC128 striata. There was a substantial overlap of concordant gene expression changes in the YAC128 striata compared with those in human HD brain. Changes in gene expression over time showed fewer striatal YAC128 RNAs altered in abundance than in the HdhQ150 striata but there was a very marked overlap in transcriptional changes at all time points. Despite the similarities in striatal expression changes at 18 months the HdhQ150 mice showed widespread mHTT and ubiquitin positive inclusion staining in the striatum whereas this was absent in the YAC128 striatum.

conclusionsThe gene expression changes in YAC128 striata show a very closely matched profile to that of HdhQ150 striata and are already significantly different between genotypes by six months of age, implying that the temporal molecular gene expression profiles of these models match very closely, despite differences in the prevalence of brain inclusion formation between the models. The YAC128 gene expression changes appear to correlate well with gene expression differences caused by ageing. A relatively small number of genes showed significant differences in expression between the striata of the two models and these could explain some of the phenotypic differences between the models.

Indexed as

TranscriptomeAnimalsBrainDisease Models, AnimalFemaleGene Expression Regulation, DevelopmentalHumansHuntington DiseaseMaleMicePrevalence

Identifiers

PMID26691352
PMCPMC4687121
OpenAlexW2206699319

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.