Evidence map›Paper›PMID 26690388›Full record

ArticleNature communications2015

Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.

Clara S Tang, He Zhang, Chloe Y Y Cheung, Ming Xu, Jenny C Y Ho, Wei Zhou, Stacey S Cherny, Yan Zhang, Oddgeir Holmen, Ka-Wing Au and 41 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 8 pooled it
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 8 syntheses or guidelines pooled it, 135 citations in OpenAlex.

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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

51 authors at 10 institutions in 5 countries.

Clara S TangDepartment of Psychiatry, the University of Hong Kong, Hong Kong, China.ORCID http://orcid.org/0000-0003-0265-2638
He ZhangDepartment of Internal Medicine, Division of Cardiovascular Medicine, University of Michigan, Ann Arbor, Michigan 48109, USA.
Chloe Y Y CheungDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Ming XuDepartment of Cardiology, Institute of Vascular Medicine, Peking University Third Hospital, Key Laboratory of Molecular Cardiovascular Sciences, Ministry of Education, Beijing 100191, China.
Jenny C Y HoDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Wei ZhouDepartment of Internal Medicine, Division of Cardiovascular Medicine, University of Michigan, Ann Arbor, Michigan 48109, USA.
Stacey S ChernyDepartment of Psychiatry, the University of Hong Kong, Hong Kong, China.ORCID http://orcid.org/0000-0002-0269-3352
Yan ZhangDepartment of Cardiology, Peking University First Hospital, Beijing 100034, China.
Oddgeir HolmenDepartment of Public Health and General Practice, HUNT Research Centre, Norwegian University of Science and Technology, 7600 Levanger, Norway.
Ka-Wing AuDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Haiyi YuDepartment of Cardiology, Institute of Vascular Medicine, Peking University Third Hospital, Key Laboratory of Molecular Cardiovascular Sciences, Ministry of Education, Beijing 100191, China.
Lin XuSchool of Public Health, the University of Hong Kong, Hong Kong, China.
Jia JiaDepartment of Cardiology, Peking University First Hospital, Beijing 100034, China.
Robert M PorschDepartment of Psychiatry, the University of Hong Kong, Hong Kong, China.
Lijie SunDepartment of Cardiology, Institute of Vascular Medicine, Peking University Third Hospital, Key Laboratory of Molecular Cardiovascular Sciences, Ministry of Education, Beijing 100191, China.
Weixian XuDepartment of Cardiology, Institute of Vascular Medicine, Peking University Third Hospital, Key Laboratory of Molecular Cardiovascular Sciences, Ministry of Education, Beijing 100191, China.
Huiping ZhengDepartment of Cardiology, Institute of Vascular Medicine, Peking University Third Hospital, Key Laboratory of Molecular Cardiovascular Sciences, Ministry of Education, Beijing 100191, China.
Lai-Yung WongDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Yiming MuDepartment of Endocrinology, Chinese People's Liberation Army General Hospital, Beijing 100853, China.
Jingtao DouDepartment of Endocrinology, Chinese People's Liberation Army General Hospital, Beijing 100853, China.
Carol H Y FongDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Shuyu WangBeijing Hypertension League Institute, Beijing 100039, China.
Xueyu HongDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Liguang DongPeking University Shougang Hospital, Beijing, China.
Yanhua LiaoPeking University Shougang Hospital, Beijing, China.
Jiansong WangPeking University Shougang Hospital, Beijing, China.
Levina S M LamCentre for Genomic Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
Xi SuDepartment of Cardiology, Wuhan Asia Heart Hospital, China.
Hua YanDepartment of Cardiology, Wuhan Asia Heart Hospital, China.
Min-Lee YangDepartment of Internal Medicine, Division of Cardiovascular Medicine, University of Michigan, Ann Arbor, Michigan 48109, USA.
Jin ChenDepartment of Internal Medicine, Division of Cardiovascular Medicine, University of Michigan, Ann Arbor, Michigan 48109, USA.
Chung-Wah SiuDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Gaoqiang XiePeking University Clinical Research Institute, Beijing, China.
Yu-Cho WooDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Yangfeng WuPeking University Clinical Research Institute, Department of Epidemiology and Biostatistics, Peking University School of Public Health, Beijing, China.
Kathryn C B TanDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Kristian HveemDepartment of Public Health and General Practice, HUNT Research Centre, Norwegian University of Science and Technology, 7600 Levanger, Norway.
Bernard M Y CheungDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Sebastian ZöllnerDepartment of Biostatistics, Center for Statistical Genetics, University of Michigan School of Public Health, Ann Arbor, Michigan 48109, USA.
Aimin XuDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Y Eugene ChenDepartment of Internal Medicine, Division of Cardiovascular Medicine, University of Michigan, Ann Arbor, Michigan 48109, USA.
Chao Qiang JiangGuangzhou No.12 Hospital, Guangzhou 510620, China.
Youyi ZhangInstitute of Vascular Medicine, Peking University Third Hospital, Beijing Key Laboratory of Cardiovascular Receptors Research, Beijing 100191, China.
Tai-Hing LamSchool of Public Health, the University of Hong Kong, Hong Kong, China.
Santhi K GaneshDepartment of Internal Medicine, Division of Cardiovascular Medicine, University of Michigan, Ann Arbor, Michigan 48109, USA.
Yong HuoDepartment of Cardiology, Peking University First Hospital, Beijing 100034, China.
Pak C ShamDepartment of Psychiatry, the University of Hong Kong, Hong Kong, China.
Karen S L LamDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Cristen J WillerDepartment of Internal Medicine, Division of Cardiovascular Medicine, University of Michigan, Ann Arbor, Michigan 48109, USA.ORCID http://orcid.org/0000-0001-5645-4966
Hung-Fat TseDepartment of Medicine, the University of Hong Kong, Hong Kong, China.
Wei GaoDepartment of Cardiology, Peking University Third Hospital, Key Laboratory of Cardiovascular Molecular Biology and Regulatory Peptides, Ministry of Health, Beijing 100191, China.
Chinese University of Hong Kong · HKPeking University · CNUniversity of Michigan · USPeking University Shougang Hospital · CNUniversity of Hong Kong · HKChinese People's Liberation Army · CNNorwegian University of Science and Technology · NOWuhan University · CNShanghai Institute of Hypertension · CNTwelfth Guangzhou City People's Hospital · CN

Funding

Using genetics to discover mechanisms of myocardial infarctionR01HL109946 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI YUQING Eugene CHEN, Ida Liisa Surakka · 2011 to 2026
$8.9M
Genetic Variants Associated with HDL and LDL Cholesterol, and Triglyceride LevelsR00HL094535 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WILLER, CRISTEN J · 2011 to 2013
$724k
Genetic Variants Associated with HDL and LDL Cholesterol, and Triglyceride LevelsK99HL094535 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WILLER, CRISTEN J · 2009 to 2010
$180k
NHLBI NIH HHS K99 HL094535NHLBI NIH HHS R00 HL094535NHLBI NIH HHS R01 HL109946
6 · The paper itself

Abstract

Blood lipids are important risk factors for coronary artery disease (CAD). Here we perform an exome-wide association study by genotyping 12,685 Chinese, using a custom Illumina HumanExome BeadChip, to identify additional loci influencing lipid levels. Single-variant association analysis on 65,671 single nucleotide polymorphisms reveals 19 loci associated with lipids at exome-wide significance (P<2.69 × 10(-7)), including three Asian-specific coding variants in known genes (CETP p.Asp459Gly, PCSK9 p.Arg93Cys and LDLR p.Arg257Trp). Furthermore, missense variants at two novel loci-PNPLA3 p.Ile148Met and PKD1L3 p.Thr429Ser-also influence levels of triglycerides and low-density lipoprotein cholesterol, respectively. Another novel gene, TEAD2, is found to be associated with high-density lipoprotein cholesterol through gene-based association analysis. Most of these newly identified coding variants show suggestive association (P<0.05) with CAD. These findings demonstrate that exome-wide genotyping on samples of non-European ancestry can identify additional population-specific possible causal variants, shedding light on novel lipid biology and CAD.

Indexed as

Genetic VariationAsian PeopleCholesterol, HDLCholesterol, LDLExomeGenotypeHumansLipid MetabolismTriglyceridesCholesterol, HDLCholesterol, LDLTriglycerides

Identifiers

PMID26690388
PMCPMC4703860
OpenAlexW2261356418

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.