Evidence map›Paper›PMID 26689988›Full record

ArticleOncotarget2016

NDN is an imprinted tumor suppressor gene that is downregulated in ovarian cancers through genetic and epigenetic mechanisms.

Hailing Yang, Partha Das, Yinhua Yu, Weiqun Mao, Yan Wang, Keith Baggerly, Ying Wang, Rebecca T Marquez, Anuja Bedi, Jinsong Liu and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Sequence variation of necdin gene in Bovidae.Journal of animal science and technology · 2018
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Hailing YangDepartments of Experimental Therapeutics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
Partha DasDepartments of Experimental Therapeutics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
Yinhua YuDepartment of Gynecology, Obstetrics and the Gynecology Hospital, Fudhan University, Shanghai, PR China.
Weiqun MaoDepartments of Experimental Therapeutics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
Yan WangDepartments of Experimental Therapeutics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
Keith BaggerlyDepartments of Bioinformatics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
Ying WangDepartments of Bioinformatics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
Rebecca T MarquezDepartments of Experimental Therapeutics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
Anuja BediTexas College of Osteopathic Medicine, Fort Worth, TX, USA.
Jinsong LiuDepartments of Pathology, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
David FishmanGynecology and Reproductive Science, Mount Sinai Hospital, New York, NY, USA.
Zhen LuDepartments of Experimental Therapeutics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
Robert C BastDepartments of Experimental Therapeutics, U.T.M.D. Anderson Cancer Center, Houston, TX, USA.
The University of Texas MD Anderson Cancer Center · USMount Sinai Hospital · USObstetrics and Gynecology Hospital of Fudan University · CNTexas College · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
UNIVERSITY OF TEXAS MD ANDERSON SPORE IN OVARIAN CANCERP50CA083639 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BAST, ROBERT C · 1999 to 2015
$33.0M
Supplement to CA135354 "ARHI (DIRAS3) in Autophagy and Dormancy of Ovarian Cancer"R01CA135354 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BAST, ROBERT C · 2009 to 2019
$3.5M
NCI NIH HHS NCI P30 CA16672NCI NIH HHS NCI P50 CA83639NCI NIH HHS P30 CA016672NCI NIH HHS P50 CA083639NCI NIH HHS R01 CA135354
6 · The paper itself

Abstract

NDN is a maternally imprinted gene consistently expressed in normal ovarian epithelium, is dramatically downregulated in the majority of ovarian cancers. Little or no NDN expression could be detected in 73% of 351 epithelial ovarian cancers. NDN was also downregulated in 10 ovarian cancer cell lines with total loss in 6 of 10. Re-expression of NDN decreased Bcl-2 levels and induced apoptosis, which significantly inhibited ovarian cancer cell growth in cell culture and in xenografts. In addition, re-expression of NDN inhibited cell migration by decreasing actin stress fiber and focal adhesion complex formation through deactivation of Src, FAK and RhoA. Loss of NDN expression in ovarian cancers could be attributed to LOH in 28% of 18 informative cases and to hypermethylation of CpG sites 1 and 2 of NDN promoter in 23% and 30% of 43 ovarian cancers, respectively. Promoter hypermethylation was also found in 5 of 10 ovarian cancer cell lines. Treatment with the demethylating agent 5-aza-2'-deoxycytidine restored NDN expression in 4 of 7 cell lines with enhanced promoter methylation levels. These observations support the conclusion that NDN is an imprinted tumor suppressor gene which affects cancer cell motility, invasion and growth and that its loss of function in ovarian cancer can be caused by both genetic and epigenetic mechanisms.

Indexed as

AnimalsApoptosisAzacitidineCell Line, TumorCell MovementCpG IslandsDecitabineDNA MethylationEpitheliumFemaleFocal Adhesion Kinase 1Focal AdhesionsGene Expression Regulation, NeoplasticHumansLoss of HeterozygosityMiceAzacitidineDecitabineFocal Adhesion Kinase 1NDN protein, humannecdinNerve Tissue ProteinsNuclear ProteinsProto-Oncogene Proteins c-bcl-2Proto-Oncogene Proteins pp60(c-src)PTK2 protein, humanrhoA GTP-Binding ProteinRHOA protein, humanTumor Suppressor Proteinscell motilityFAKgrowth inhibitionimprintingNDNtumor suppressor gene

Identifiers

PMID26689988
PMCPMC4823087
OpenAlexW2272904206

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.