ArticleScientific reports2015
Gene map of large yellow croaker (Larimichthys crocea) provides insights into teleost genome evolution and conserved regions associated with growth.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed, 47 citations in OpenAlex.
- A non-classical necroptosis pathway mediated by caspases.Cell communication and signaling : CCS · 2026Article
- Transcriptome and Metabolome Analyses Reveal Molecular Mechanisms Regulating Growth Traits in Large Yellow Croaker (International journal of molecular sciences · 2025Article
- Chromosome-level genome assembly for three geographical stocks of large yellow croaker (Larimichthys crocea).Scientific data · 2024Article
- QTL Mapping-Based Identification of Visceral White-Nodules Disease Resistance Genes inInternational journal of molecular sciences · 2024Article
- Innovative approach for high-throughput exploiting sex-specific markers in Japanese parrotfish Oplegnathus fasciatus.GigaScience · 2024Article
- Investigating the role of genetic variation inEcology and evolution · 2023Article
- Genome-Wide RADseq Reveals Genetic Differentiation of Wild and Cultured Populations of Large Yellow Croaker.Genes · 2023Article
- Biochemical indices, gene expression, and SNPs associated with salinity adaptation in juvenile chum salmon (PeerJ · 2022Article
- Genome-Wide Association Study Identifies Genomic Loci of Sex Determination and Gonadosomatic Index Traits in Large Yellow Croaker (Larimichthys crocea).Marine biotechnology (New York, N.Y.) · 2021Article
- Construction of Genetic Linkage Maps From a Hybrid Family of Large Yellow Croaker (Frontiers in genetics · 2021Article
- Construction of High-Resolution RAD-Seq Based Linkage Map, Anchoring Reference Genome, and QTL Mapping of the Sex Chromosome in the Marine MedakaG3 (Bethesda, Md.) · 2019Article
- The sequencing and de novo assembly of the Larimichthys crocea genome using PacBio and Hi-C technologies.Scientific data · 2019Article
- Chromosome assembly of Collichthys lucidus, a fish of Sciaenidae with a multiple sex chromosome system.Scientific data · 2019Article
- Constructing a High-Density Genetic Linkage Map for Large Yellow Croaker (Larimichthys crocea) and Mapping Resistance Trait Against Ciliate Parasite Cryptocaryon irritans.Marine biotechnology (New York, N.Y.) · 2019Article
- Construction of a High-Density Linkage Map and QTL Fine Mapping for Growth- and Sex-Related Traits in Channel Catfish (Frontiers in genetics · 2019Article
- A high-density genetic linkage map and QTL mapping for growth and sex of yellow drum (Nibea albiflora).Scientific reports · 2018Article
- The identification of growth, immune related genes and marker discovery through transcriptome in the yellow drum (Nibea albiflora).Genes & genomics · 2018Article
- Predict the Relationship between Gene and Large Yellow Croaker's Economic Traits.Molecules (Basel, Switzerland) · 2017Article
- Differential gene expression and SNP association between fast- and slow-growing turbot (Scophthalmus maximus).Scientific reports · 2017Article
- A High-Density Genetic Linkage Map and QTL Fine Mapping for Body Weight in Crucian Carp (G3 (Bethesda, Md.) · 2017Article
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
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Abstract
The genetic map of a species is essential for its whole genome assembly and can be applied to the mapping of important traits. In this study, we performed RNA-seq for a family of large yellow croakers (Larimichthys crocea) and constructed a high-density genetic map. In this map, 24 linkage groups comprised 3,448 polymorphic SNP markers. Approximately 72.4% (2,495) of the markers were located in protein-coding regions. Comparison of the croaker genome with those of five model fish species revealed that the croaker genome structure was closer to that of the medaka than to the remaining four genomes. Because the medaka genome preserves the teleost ancestral karyotype, this result indicated that the croaker genome might also maintain the teleost ancestral genome structure. The analysis also revealed different genome rearrangements across teleosts. QTL mapping and association analysis consistently identified growth-related QTL regions and associated genes. Orthologs of the associated genes in other species were demonstrated to regulate development, indicating that these genes might regulate development and growth in croaker. This gene map will enable us to construct the croaker genome for comparative studies and to provide an important resource for selective breeding of croaker.
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