Evidence map›Paper›PMID 26689363›Full record

ArticleNature2016

Structure of the voltage-gated two-pore channel TPC1 from Arabidopsis thaliana.

Jiangtao Guo, Weizhong Zeng, Qingfeng Chen, Changkeun Lee, Liping Chen, Yi Yang, Chunlei Cang, Dejian Ren, Youxing Jiang

Open access · greenAbstract read
In one paragraph

Article in Nature, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed
25.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed, 237 citations in OpenAlex.

  1. Review
  2. Allosteric switching of CaThe EMBO journal · 2026
    Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Inter-Organellar CaCells · 2025
    Review
  8. Article
  9. Article
  10. Electric field-induced pore constriction in the human KProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Voltage sensors.Molecular pharmacology · 2025
    Review
  13. Article
  14. Review
  15. Review
  16. Plasticity of the selectivity filter is essential for permeation in lysosomal TPC2 channels.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Review
  18. Article
  19. Article
  20. eLife · 2023
    Article

84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jiangtao GuoDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.
Weizhong ZengDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.
Qingfeng ChenDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.
Changkeun LeeDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.
Liping ChenDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.
Yi YangDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.
Chunlei CangDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Dejian RenDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Youxing JiangDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.
The University of Texas Southwestern Medical Center · USUniversity of Pennsylvania · USHoward Hughes Medical Institute · US

Funding

Sodium Leak Channels and Regulation by NeurotransmittersR01NS055293 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI REN, DEJIAN · 2008 to 2017
$3.6M
Structural mechanisms of ion selectivity and gating in tetrameric cation channelsR01GM079179 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI JIANG, YOUXING · 2007 to 2019
$3.5M
Regulation of Neuronal Excitability by Extracellular CalciumR01NS074257 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI REN, DEJIAN · 2011 to 2015
$1.7M
Howard Hughes Medical InstituteNIGMS NIH HHS GM079179NIGMS NIH HHS R01 GM079179NINDS NIH HHS NS055293NINDS NIH HHS NS074257NINDS NIH HHS R01 NS055293NINDS NIH HHS R01 NS074257
6 · The paper itself

Abstract

Two-pore channels (TPCs) contain two copies of a Shaker-like six-transmembrane (6-TM) domain in each subunit and are ubiquitously expressed in both animals and plants as organellar cation channels. Here we present the crystal structure of a vacuolar two-pore channel from Arabidopsis thaliana, AtTPC1, which functions as a homodimer. AtTPC1 activation requires both voltage and cytosolic Ca(2+). Ca(2+) binding to the cytosolic EF-hand domain triggers conformational changes coupled to the pair of pore-lining inner helices from the first 6-TM domains, whereas membrane potential only activates the second voltage-sensing domain, the conformational changes of which are coupled to the pair of inner helices from the second 6-TM domains. Luminal Ca(2+) or Ba(2+) can modulate voltage activation by stabilizing the second voltage-sensing domain in the resting state and shift voltage activation towards more positive potentials. Our Ba(2+)-bound AtTPC1 structure reveals a voltage sensor in the resting state, providing hitherto unseen structural insight into the general voltage-gating mechanism among voltage-gated channels.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsBariumBinding SitesCalciumCalcium ChannelsCrystallography, X-RayCytosolEF Hand MotifsElectric ConductivityHEK293 CellsHumansIon Channel GatingIon TransportMembrane PotentialsArabidopsis ProteinsBariumCalciumCalcium ChannelsProtein SubunitsTPC1 protein, ArabidopsisTwo-Pore Channels

Identifiers

PMID26689363
PMCPMC4841471
OpenAlexW2236818481

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.