Evidence map›Paper›PMID 26689258›Full record

ArticleScientific reports2015

Peptides derived from CXCL8 based on in silico analysis inhibit CXCL8 interactions with its receptor CXCR1.

Shinn-Jong Jiang, Je-Wen Liou, Chun-Chun Chang, Yi Chung, Lee-Fong Lin, Hao-Jen Hsu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  6. Therapeutic inhibition of CXCR1/2: where do we stand?Internal and emergency medicine · 2023
    Review
  7. Article
  8. Prediction of Protein Solubility Based on Sequence Feature Fusion and DDcCNN.Interdisciplinary sciences, computational life sciences · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Shinn-Jong JiangDepartment of Biochemistry, School of Medicine, Tzu Chi University, Hualien 97004, Taiwan.
Je-Wen LiouDepartment of Biochemistry, School of Medicine, Tzu Chi University, Hualien 97004, Taiwan.
Chun-Chun ChangInstitute of Medical Sciences, Tzu Chi University, Hualien 97004, Taiwan.
Yi ChungDepartment of Life Sciences, Tzu Chi University, Hualien 97004, Taiwan.
Lee-Fong LinDepartment of Life Sciences, Tzu Chi University, Hualien 97004, Taiwan.
Hao-Jen HsuDepartment of Life Sciences, Tzu Chi University, Hualien 97004, Taiwan.
Tzu Chi University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chemokine CXCL8 is crucial for regulation of inflammatory and immune responses via activating its cognate receptor CXCR1. In this study, molecular docking and binding free energy calculations were combined to predict the initial binding event of CXCL8 to CXCR1 for peptide drug design. The simulations reveal that in the initial binding, the N-loop of CXCL8 interacts with the N-terminus of CXCR1, which is dominated by electrostatic interactions. The derived peptides from the binding region of CXCL8 are synthesized for further confirmation. Surface plasmon resonance analyses indicate that the CXCL8 derived peptide with 14 residues is able to bind to the receptor CXCR1 derived peptide with equilibrium KD of 252 μM while the peptide encompassing a CXCL8 K15A mutation hardly binds to CXCR1 derived peptide (KD = 1553 μM). The cell experiments show that the designed peptide inhibits CXCL8-induced and LPS-activated monocytes adhesion and transmigration. However, when the peptides were mutated on two lysine residues (K15 and K20), the inhibition effects were greatly reduced indicating these two amino acids are key residues for the initial binding of CXCL8 to CXCR1. This study demonstrates that in silico prediction based functional peptide design can be effective for developing anti-inflammation drugs.

Indexed as

Amino Acid SequenceAnimalsCattleCell AdhesionCell LineCell MovementComputer SimulationEndothelial CellsHumansImmobilized ProteinsInterleukin-8LigandsLipopolysaccharidesMolecular Docking SimulationMolecular Sequence DataMonocytesImmobilized ProteinsInterleukin-8LigandsLipopolysaccharidesMutant ProteinsPeptidesReceptors, Interleukin-8A

Identifiers

PMID26689258
PMCPMC4686899
OpenAlexW2401325807

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.