Evidence map›Paper›PMID 26687479›Full record

ArticleScientific reports2015

The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis.

Giorgio Oliviero, Nayla Munawar, Ariane Watson, Gundula Streubel, Gwendolyn Manning, Vivian Bardwell, Adrian P Bracken, Gerard Cagney

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Giorgio OlivieroSchool of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, IRELAND.
Nayla MunawarSchool of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, IRELAND.
Ariane WatsonSchool of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, IRELAND.
Gundula StreubelDepartment of Genetics, Trinity College Dublin, Dublin 2, IRELAND.
Gwendolyn ManningSchool of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, IRELAND.
Vivian BardwellDevelopmental Biology Center, Masonic Cancer Center, and Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55455 USA.
Adrian P BrackenDepartment of Genetics, Trinity College Dublin, Dublin 2, IRELAND.
Gerard CagneySchool of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, IRELAND.

Funding

Molecular Basis of Action of the Putative Oncogene BCL6R01CA071540 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BARDWELL, VIVIAN J · 2002 to 2012
$3.0M
NCI NIH HHS R01 CA071540NCI NIH HHS R01CA071540
6 · The paper itself

Abstract

PCGF1 encodes one of six human Polycomb RING finger homologs that are linked to transcriptional repression and developmental gene regulation. Individual PCGF proteins define discrete Polycomb Repressor Complex 1 (PRC1) multi-protein complexes with diverse subunit composition whose functions are incompletely understood. PCGF1 is a component of a variant PRC1 complex that also contains the BCL6 co-repressor BCOR and the histone demethylase KDM2B. To further investigate the role of PCGF1, we mapped the physical interactions of the protein under endogenous conditions in a cell model of neuronal differentiation. Using stringent statistical cut-offs, 83 highly enriched interacting proteins were identified, including all previously reported members of the variant PRC1 complex containing PCGF1, as well as proteins linked to diverse cellular pathways such as chromatin and cell cycle regulation. Notably, a sub-network of proteins associated with the establishment and maintenance of pluripotency (NANOG, OCT4, PATZ1, and the developmental regulator DPPA4) were found to independently interact with PCGF1 in a subsequent round of physical interaction mapping experiments. Furthermore, knockdown of PCGF1 results in reduced expression of DPPA4 and other subunits of the variant PRC1 complex at both mRNA and protein levels. Thus, PCGF1 represents a physical and functional link between Polycomb function and pluripotency.

Indexed as

Cell DifferentiationDNA-Binding ProteinsEmbryonic DevelopmentF-Box ProteinsGene Expression Regulation, DevelopmentalGene Knockdown TechniquesHEK293 CellsHistonesHumansJumonji Domain-Containing Histone DemethylasesNeuronsNuclear ProteinsPolycomb Repressive Complex 1Proto-Oncogene ProteinsRepressor ProteinsBCOR protein, humanDNA-Binding ProteinsDPPA4 protein, humanF-Box ProteinsHistonesJumonji Domain-Containing Histone DemethylasesKDM2A protein, humanNuclear ProteinsPCGF1 protein, humanPolycomb Repressive Complex 1Proto-Oncogene ProteinsRepressor Proteins

Identifiers

PMID26687479
PMCPMC4685312

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.