Evidence map›Paper›PMID 26685054›Full record

ArticleBiochemistry2016

Nuclear Magnetic Resonance Insight into the Multiple Glycosaminoglycan Binding Modes of the Link Module from Human TSG-6.

Younghee Park, Thomas A Jowitt, Anthony J Day, James H Prestegard

Abstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. NMR Methods for Characterization of Glycosaminoglycan-Chemokine Interactions.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. TSG-6 - a double-edged sword for osteoarthritis (OA).Osteoarthritis and cartilage · 2018
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Younghee ParkComplex Carbohydrate Research Center, University of Georgia , 315 Riverbend Road, Athens, Georgia 30602, United States.
Thomas A JowittWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester , Oxford Road, Manchester M13 9PT, U.K.
Anthony J DayWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester , Oxford Road, Manchester M13 9PT, U.K.
James H PrestegardComplex Carbohydrate Research Center, University of Georgia , 315 Riverbend Road, Athens, Georgia 30602, United States.

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Electronics Consoles for Biomolecular NMRS10RR027097 · NCRR · UNIVERSITY OF GEORGIA · PI URBAUER, JEFFREY L · 2011 to 2011
$364k
Arthritis Research UK 16539Arthritis Research UK 18472NCRR NIH HHS S10 RR027097NCRR NIH HHS S10RR027097NIGMS NIH HHS P41 GM103390NIGMS NIH HHS P41GM103390
6 · The paper itself

Abstract

Tumor necrosis factor-stimulated gene-6 (TSG-6) is a hyaluronan (HA)-binding protein that is essential for stabilizing and remodeling the extracellular matrix (ECM) during ovulation and inflammatory disease processes such as arthritis. The Link module, one of the domains of TSG-6, is responsible for binding hyaluronan and other glycosaminoglycans found in the ECM. In this study, we used a well-defined chondroitin sulfate (CS) hexasaccharide (ΔC444S) to determine the structure of the Link module, in solution, in its chondroitin sulfate-bound state. A variety of nuclear magnetic resonance techniques were employed, including chemical shift perturbation, residual dipolar couplings (RDCs), nuclear Overhauser effects, spin relaxation measurements, and paramagnetic relaxation enhancements from a spin-labeled analogue of ΔC444S. The binding site for ΔC444S on the Link module overlapped with that of HA. Surprisingly, ΔC444S binding induced dimerization of the Link module (as confirmed by analytical ultracentrifugation), and a second weak binding site that partially overlapped with a previously identified heparin site was detected. A dimer model was generated using chemical shift perturbations and RDCs as restraints in the docking program HADDOCK. We postulate that the molecular cross-linking enhanced by the multiple binding modes of the Link module might be critical for remodeling the ECM during inflammation/ovulation and might contribute to other functions of TSG-6.

Indexed as

Magnetic Resonance SpectroscopyCell Adhesion MoleculesChondroitin SulfatesGlycosaminoglycansHumansHyaluronan ReceptorsHyaluronic AcidProtein BindingProtein Structure, TertiaryCell Adhesion MoleculesChondroitin SulfatesGlycosaminoglycansHyaluronan ReceptorsHyaluronic AcidTNFAIP6 protein, human

Identifiers

PMID26685054
PMCPMC5073374

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.