Evidence map›Paper›PMID 26684831›Full record

ArticlePLoS neglected tropical diseases2015

Genomic and Proteomic Studies on the Mode of Action of Oxaboroles against the African Trypanosome.

Deuan C Jones, Bernardo J Foth, Michael D Urbaniak, Stephen Patterson, Han B Ong, Matthew Berriman, Alan H Fairlamb

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Chemotherapy for second-stage human African trypanosomiasis: drugs in use.The Cochrane database of systematic reviews · 2021
    Pooled it
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  14. Clinical and veterinary trypanocidal benzoxaboroles target CPSF3.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Deuan C JonesSchool of Life Sciences, University of Dundee, Dundee, United Kingdom.
Bernardo J FothParasite Genomics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, United Kingdom.
Michael D UrbaniakDivision of Biomedical and Life Sciences, Lancaster University, Lancaster, United Kingdom.
Stephen PattersonSchool of Life Sciences, University of Dundee, Dundee, United Kingdom.
Han B OngSchool of Life Sciences, University of Dundee, Dundee, United Kingdom.
Matthew BerrimanDivision of Biomedical and Life Sciences, Lancaster University, Lancaster, United Kingdom.
Alan H FairlambSchool of Life Sciences, University of Dundee, Dundee, United Kingdom.
University of Dundee · GBLancaster University · GBWellcome Sanger Institute · GB

Funding

Wellcome Trust 079838Wellcome Trust 097945Wellcome Trust 098051
6 · The paper itself

Abstract

SCYX-7158, an oxaborole, is currently in Phase I clinical trials for the treatment of human African trypanosomiasis. Here we investigate possible modes of action against Trypanosoma brucei using orthogonal chemo-proteomic and genomic approaches. SILAC-based proteomic studies using an oxaborole analogue immobilised onto a resin was used either in competition with a soluble oxaborole or an immobilised inactive control to identify thirteen proteins common to both strategies. Cell-cycle analysis of cells incubated with sub-lethal concentrations of an oxaborole identified a subtle but significant accumulation of G2 and >G2 cells. Given the possibility of compromised DNA fidelity, we investigated long-term exposure of T. brucei to oxaboroles by generating resistant cell lines in vitro. Resistance proved more difficult to generate than for drugs currently used in the field, and in one of our three cell lines was unstable. Whole-genome sequencing of the resistant cell lines revealed single nucleotide polymorphisms in 66 genes and several large-scale genomic aberrations. The absence of a simple consistent mechanism among resistant cell lines and the diverse list of binding partners from the proteomic studies suggest a degree of polypharmacology that should reduce the risk of resistance to this compound class emerging in the field. The combined genetic and chemical biology approaches have provided lists of candidates to be investigated for more detailed information on the mode of action of this promising new drug class.

Indexed as

Gene Expression ProfilingAntiprotozoal AgentsBenzamidesBoron CompoundsDNA, ProtozoanDrug ResistanceGenome, ProtozoanGenomicsPolymorphism, GeneticProteomeProteomicsSelection, GeneticSequence Analysis, DNATrypanosoma brucei bruceiAntiprotozoal AgentsBenzamidesBoron CompoundsDNA, ProtozoanProteomeSCYX 7158

Identifiers

PMID26684831
PMCPMC4689576
OpenAlexW2213305331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.