Evidence map›Paper›PMID 26684737›Full record

ArticlePloS one2015

A Functional Tricarboxylic Acid Cycle Operates during Growth of Bordetella pertussis on Amino Acid Mixtures as Sole Carbon Substrates.

Marie Izac, Dominique Garnier, Denis Speck, Nic D Lindley

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Deep longitudinal multi-omics analysis ofFrontiers in microbiology · 2023
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. mSphere · 2019
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Marie IzacUniversité de Toulouse; INSA, UPSr, INP, LISBP, Toulouse, France.
Dominique GarnierSanofi Pasteur, Marcy-l'Étoile, France.
Denis SpeckSanofi Pasteur, Marcy-l'Étoile, France.
Nic D LindleyUniversité de Toulouse; INSA, UPSr, INP, LISBP, Toulouse, France.
Sanofi (France) · FRLaboratoire d'Ingénierie des Systèmes Biologiques et des Procédés · FRUniversité Fédérale de Toulouse Midi-Pyrénées · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been claimed that citrate synthase, aconitase and isocitrate dehydrogenase activities are non-functional in Bordetella pertussis and that this might explain why this bacterium's growth is sometimes associated with accumulation of polyhydroxybutyrate (PHB) and/or free fatty acids. However, the sequenced genome includes the entire citric acid pathway genes. Furthermore, these genes were expressed and the corresponding enzyme activities detected at high levels for the pathway when grown on a defined medium imitating the amino acid content of complex media often used for growth of this pathogenic microorganism. In addition, no significant PHB or fatty acids could be detected. Analysis of the carbon balance and stoichiometric flux analysis based on specific rates of amino acid consumption, and estimated biomass requirements coherent with the observed growth rate, clearly indicate that a fully functional tricarboxylic acid cycle operates in contrast to previous reports.

Indexed as

Citric Acid CycleAmino AcidsBacterial ProteinsBordetella pertussisCarbohydrate MetabolismCitrate (si)-SynthaseCulture MediaGenome, BacterialIsocitrate DehydrogenaseKineticsTranscriptomeAmino AcidsBacterial ProteinsCitrate (si)-SynthaseCulture MediaIsocitrate Dehydrogenase

Identifiers

PMID26684737
PMCPMC4684311
OpenAlexW2198788552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.