Evidence map›Paper›PMID 26681307›Full record

ArticleGenetics, selection, evolution : GSE2015

Identification of quantitative trait loci for body temperature, body weight, breast yield, and digestibility in an advanced intercross line of chickens under heat stress.

Angelica Van Goor, Kevin J Bolek, Chris M Ashwell, Mike E Persia, Max F Rothschild, Carl J Schmidt, Susan J Lamont

Open access · goldAbstract read
In one paragraph

Article in Genetics, selection, evolution : GSE, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 92 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Angelica Van GoorDepartment of Animal Science, Iowa State University, Ames, IA, USA. angelica@iastate.edu.
Kevin J BolekDepartment of Animal Science, University of California, Davis, CA, USA. kjbolek@ucdavis.edu.
Chris M AshwellDepartment Poultry Science, North Carolina State University, Raleigh, NC, USA. chris_ashwell@ncsu.edu.
Mike E PersiaDepartment of Animal and Poultry Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA. mpersia@vt.edu.
Max F RothschildDepartment of Animal Science, Iowa State University, Ames, IA, USA. mfrothsc@iastate.edu.
Carl J SchmidtDepartment of Animal and Food Sciences, University of Delaware, Newark, DE, USA. schmidtc@udel.edu.
Susan J LamontDepartment of Animal Science, Iowa State University, Ames, IA, USA. sjlamont@iastate.edu.
Iowa State University · USNorth Carolina State University · USUniversity of California, Davis · USUniversity of Delaware · USVirginia Tech · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLosses in poultry production due to heat stress have considerable negative economic consequences. Previous studies in poultry have elucidated a genetic influence on response to heat. Using a unique chicken genetic resource, we identified genomic regions associated with body temperature (BT), body weight (BW), breast yield, and digestibility measured during heat stress. Identifying genes associated with a favorable response during high ambient temperature can facilitate genetic selection of heat-resilient chickens.

methodsGenerations F18 and F19 of a broiler (heat-susceptible) × Fayoumi (heat-resistant) advanced intercross line (AIL) were used to fine-map quantitative trait loci (QTL). Six hundred and thirty-one birds were exposed to daily heat cycles from 22 to 28 days of age, and phenotypes were measured before heat treatment, on the 1st day and after 1 week of heat treatment. BT was measured at these three phases and BW at pre-heat treatment and after 1 week of heat treatment. Breast muscle yield was calculated as the percentage of BW at day 28. Ileal feed digestibility was assayed from digesta collected from the ileum at day 28. Four hundred and sixty-eight AIL were genotyped using the 600 K Affymetrix chicken SNP (single nucleotide polymorphism) array. Trait heritabilities were estimated using an animal model. A genome-wide association study (GWAS) for these traits and changes in BT and BW was conducted using Bayesian analyses. Candidate genes were identified within 200-kb regions around SNPs with significant association signals.

resultsHeritabilities were low to moderate (0.03 to 0.35). We identified QTL for BT on Gallus gallus chromosome (GGA)14, 15, 26, and 27; BW on GGA1 to 8, 10, 14, and 21; dry matter digestibility on GGA19, 20 and 21; and QTL of very large effect for breast muscle yield on GGA1, 15, and 22 with a single 1-Mb window on GGA1 explaining more than 15% of the genetic variation.

conclusionsThis is the first study to estimate heritabilities and perform GWAS using this AIL for traits measured during heat stress. Significant QTL as well as low to moderate heritabilities were found for each trait, and these QTL may facilitate selection for improved animal performance in hot climatic conditions.

Indexed as

ChickensHot TemperatureQuantitative Trait, HeritableQuantitative Trait LociStress, PhysiologicalAnimalsBody TemperatureBody WeightBreedingCrosses, GeneticGene FrequencyGenetic Association StudiesGenome-Wide Association StudyGenotypeInheritance PatternsPhenotype

Identifiers

PMID26681307
PMCPMC4683778
OpenAlexW2196577623

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.