Evidence map›Paper›PMID 26680234›Full record

ArticleBMC microbiology2015

Time-resolved amino acid uptake of Clostridium difficile 630Δerm and concomitant fermentation product and toxin formation.

Meina Neumann-Schaal, Julia Danielle Hofmann, Sabine Eva Will, Dietmar Schomburg

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 113 citations in OpenAlex.

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  9. Disulphide bond-forming enzymes in clostridial species.Microbiology (Reading, England) · 2025
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  14. Expanding the cultivable human archaeome:International journal of systematic and evolutionary microbiology · 2025
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  17. Unraveling Cecal Alterations inJournal of proteome research · 2024
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Meina Neumann-SchaalTechnische Universität Braunschweig, Department of Bioinformatics and Biochemistry and Braunschweig Integrated Center of Systems Biology (BRICS), Langer Kamp 19b, 38106, Braunschweig, Germany. m.neumann-schaal@tu-braunschweig.de.
Julia Danielle HofmannTechnische Universität Braunschweig, Department of Bioinformatics and Biochemistry and Braunschweig Integrated Center of Systems Biology (BRICS), Langer Kamp 19b, 38106, Braunschweig, Germany. ju.hofmann@tu-braunschweig.de.
Sabine Eva WillTechnische Universität Braunschweig, Department of Bioinformatics and Biochemistry and Braunschweig Integrated Center of Systems Biology (BRICS), Langer Kamp 19b, 38106, Braunschweig, Germany. sabine.will@tu-braunschweig.de.
Dietmar SchomburgTechnische Universität Braunschweig, Department of Bioinformatics and Biochemistry and Braunschweig Integrated Center of Systems Biology (BRICS), Langer Kamp 19b, 38106, Braunschweig, Germany. d.schomburg@tu-braunschweig.de.
Technische Universität Braunschweig · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClostridium difficile is one of the major nosocomial threats causing severe gastrointestinal infections. Compared to the well documented clinical symptoms, little is known about the processes in the bacterial cell like the regulation and activity of metabolic pathways. In this study, we present time-resolved and global data of extracellular substrates and products. In a second part, we focus on the correlation of fermentation products and substrate uptake with toxin production.

resultsFormation of different fermentation products during growth in a comparison between the two different media in a global approach was studied using non-targeted gas chromatography-mass spectrometry (GC-MS) based analysis. During cultivation in a casamino acids medium and minimal medium, the clinical isolate C. difficile 630Δerm showed major differences in amino acid utilization: In casamino acids medium, C. difficile preferred proline, leucine and cysteine as carbon and energy sources while glutamate and lysine were not or hardly used. In contrast, proline and leucine were consumed at a significantly later stage in minimal medium. Due to the more complex substrate mixture more fermentation products were detectable in the casamino acids medium, accompanied by major changes in the ratios between oxidative and reductive Stickland products. Different glucose consumption dynamics were observed in presence of either casamino acids or the minimal set of amino acids, accompanied by major changes in butanoate formation. This was associated with a variation in both the toxin yield and a change in the ratio of toxin A to toxin B.

conclusionsSince in all media compositions, more than one substrate was available as a suitable carbon source, availability of different carbon sources and their metabolic fate appears to be the key factor for toxin formation.

Indexed as

FermentationAmino AcidsBacterial ProteinsBacterial ToxinsClostridioides difficileCulture MediaEnterotoxinsGas Chromatography-Mass SpectrometryGlucoseSecondary MetabolismAmino AcidsBacterial ProteinsBacterial Toxinscasamino acidsCulture MediaEnterotoxinsGlucosetcdA protein, Clostridium difficiletoxB protein, Clostridium difficile

Identifiers

PMID26680234
PMCPMC4683695
OpenAlexW2203794122

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.