Evidence map›Paper›PMID 26680018›Full record

ArticleEpigenetics2015

Racial differences in genome-wide methylation profiling and gene expression in breast tissues from healthy women.

Min-Ae Song, Theodore M Brasky, Catalin Marian, Daniel Y Weng, Cenny Taslim, Ramona G Dumitrescu, Adana A Llanos, Jo L Freudenheim, Peter G Shields

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 67 citations in OpenAlex.

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  8. Research Silos in Cancer Disparities: Obstacles to Improving Clinical Outcomes for Underserved Patient Populations.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
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  11. A biosocial return to race? A cautionary view for the postgenomic era.American journal of human biology : the official journal of the Human Biology Council · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 2 countries.

Min-Ae Songa Comprehensive Cancer Center; The Ohio State University and James Cancer Hospital ; Columbus , Ohio , USA.
Theodore M Braskya Comprehensive Cancer Center; The Ohio State University and James Cancer Hospital ; Columbus , Ohio , USA.
Catalin Mariana Comprehensive Cancer Center; The Ohio State University and James Cancer Hospital ; Columbus , Ohio , USA.
Daniel Y Wenga Comprehensive Cancer Center; The Ohio State University and James Cancer Hospital ; Columbus , Ohio , USA.
Cenny Taslima Comprehensive Cancer Center; The Ohio State University and James Cancer Hospital ; Columbus , Ohio , USA.
Ramona G Dumitrescuc Distilled Spirits Council of the United States ; Washington , DC , USA.
Adana A Llanosd Department of Epidemiology ; Rutgers School of Public Health and Rutgers Cancer Institute of New Jersey ; New Brunswick , NJ 08903 , USA.
Jo L Freudenheime Department of Epidemiology and Environmental Health; School of Public Health and Health Professions ; University at Buffalo ; Buffalo , NY 14214 , USA.
Peter G Shieldsa Comprehensive Cancer Center; The Ohio State University and James Cancer Hospital ; Columbus , Ohio , USA.
U-M Rogel Cancer CenterRutgers, The State University of New Jersey · USThe Ohio State University · USThe Ohio State University Comprehensive Cancer Center – Arthur G. James Cancer Hospital and Richard J. Solove Research Institute · USUnited States Chamber of Commerce · USUniversity at Buffalo, State University of New York · USVictor Babeș University of Medicine and Pharmacy Timișoara · RO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Breast cancer is more common in European Americans (EAs) than in African Americans (AAs) but mortality from breast cancer is higher among AAs. While there are racial differences in DNA methylation and gene expression in breast tumors, little is known whether such racial differences exist in breast tissues of healthy women. Genome-wide DNA methylation and gene expression profiling was performed in histologically normal breast tissues of healthy women. Linear regression models were used to identify differentially-methylated CpG sites (CpGs) between EAs (n = 61) and AAs (n = 22). Correlations for methylation and expression were assessed. Biological functions of the differentially-methylated genes were assigned using the Ingenuity Pathway Analysis. Among 485 differentially-methylated CpGs by race, 203 were hypermethylated in EAs, and 282 were hypermethylated in AAs. Promoter-related differentially-methylated CpGs were more frequently hypermethylated in EAs (52%) than AAs (27%) while gene body and intergenic CpGs were more frequently hypermethylated in AAs. The differentially-methylated CpGs were enriched for cancer-associated genes with roles in cell death and survival, cellular development, and cell-to-cell signaling. In a separate analysis for correlation in EAs and AAs, different patterns of correlation were found between EAs and AAs. The correlated genes showed different biological networks between EAs and AAs; networks were connected by Ubiquitin C. To our knowledge, this is the first comprehensive genome-wide study to identify differences in methylation and gene expression between EAs and AAs in breast tissues from healthy women. These findings may provide further insights regarding the contribution of epigenetic differences to racial disparities in breast cancer.

Indexed as

DNA MethylationPromoter Regions, GeneticAdultBiomarkers, TumorBlack or African AmericanBreastBreast NeoplasmsCpG IslandsEpigenesis, GeneticFemaleGenome-Wide Association StudyHumansLinear ModelsMiddle AgedRisk FactorsTranscriptomeBiomarkers, Tumorbreastdisparitygene expressiongenome-wide DNA methylationrace

Identifiers

PMID26680018
PMCPMC4844220
OpenAlexW2286332620

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.