Evidence map›Paper›PMID 26679344›Full record

ArticleBMC genomics2015

The transcriptional profile of coronary arteritis in Kawasaki disease.

Anne H Rowley, Kristine M Wylie, Kwang-Youn A Kim, Adam J Pink, Amy Yang, Rebecca Reindel, Susan C Baker, Stanford T Shulman, Jan M Orenstein, Mark W Lingen and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 3 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 3 syntheses or guidelines pooled it, 74 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Anne H RowleyDepartment of Pediatrics, Northwestern University Feinberg School of Medicine, 310 E Superior Street, Morton 4-685B, Chicago, IL, 60611, USA. a-rowley@northwestern.edu.
Kristine M WylieDepartment of Pediatrics, Washington University School of Medicine, Saint Louis, MO, USA.
Kwang-Youn A KimDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Adam J PinkDepartment of Pediatrics, Northwestern University Feinberg School of Medicine, 310 E Superior Street, Morton 4-685B, Chicago, IL, 60611, USA.
Amy YangDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Rebecca ReindelDepartment of Pediatrics, Northwestern University Feinberg School of Medicine, 310 E Superior Street, Morton 4-685B, Chicago, IL, 60611, USA.
Susan C BakerDepartment of Microbiology/Immunology, Loyola University Stritch School of Medicine, Maywood, IL, USA.
Stanford T ShulmanDepartment of Pediatrics, Northwestern University Feinberg School of Medicine, 310 E Superior Street, Morton 4-685B, Chicago, IL, 60611, USA.
Jan M OrensteinDepartment of Pathology, George Washington University School of Medicine, Washington, DC, USA.
Mark W LingenDepartment of Pathology, University of Chicago Pritzker School of Medicine, Chicago, IL, USA.
George M WeinstockThe McDonnell Genome Institute at Washington University, Washington University School of Medicine, Saint Louis, MO, USA.
Todd N WylieDepartment of Pediatrics, Washington University School of Medicine, Saint Louis, MO, USA.
Northwestern University · USWashington University in St. Louis · USAbbVie (United States) · USGeorge Washington University · USJames S. McDonnell Foundation · USLoyola University Chicago · USUniversity of Chicago · US

Funding

Northwestern University Clinical and Translational Science Institute (NUCATS)UL1TR001422 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI D'AQUILA, RICHARD · 2015 to 2023
$56.8M
The Pathogenesis of Kawasaki DiseaseR01HL063771 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ROWLEY, ANNE H · 2000 to 2011
$3.6M
Deep Sequencing of Kawasaki Disease TissuesR21HL109955 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ROWLEY, ANNE H · 2011 to 2012
$437k
The Pathogenesis of Kawasaki DiseaseR56AI106030 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ROWLEY, ANNE H · 2014 to 2014
$401k
NCATS NIH HHS UL1 TR001422NHLBI NIH HHS HL109955NHLBI NIH HHS HL63771NHLBI NIH HHS R01 HL063771NHLBI NIH HHS R21 HL109955NIAID NIH HHS AI106030NIAID NIH HHS R56 AI106030
6 · The paper itself

Abstract

backgroundKawasaki Disease (KD) can cause potentially life-threatening coronary arteritis in young children, and has a likely infectious etiology. Transcriptome profiling is a powerful approach to investigate gene expression in diseased tissues. RNA sequencing of KD coronary arteries could elucidate the etiology and the host response, with the potential to improve KD diagnosis and/or treatment.

methodsDeep RNA sequencing was performed on KD (n = 8) and childhood control (n = 7) coronary artery tissues, revealing 1074 differentially expressed mRNAs. Non-human RNA sequences were subjected to a microbial discovery bioinformatics platform, and microbial sequences were analyzed by Metastats for association with KD.

resultsT lymphocyte activation, antigen presentation, immunoglobulin production, and type I interferon response were significantly upregulated in KD arteritis, while the tumor necrosis factor α pathway was not differentially expressed. Transcripts from known infectious agents were not specifically associated with KD coronary arteritis.

conclusionsThe immune transcriptional profile in KD coronary artery tissues has features of an antiviral immune response such as activated cytotoxic T lymphocyte and type I interferon-induced gene upregulation. These results provide new insights into the pathogenesis of KD arteritis that can guide selection of new immunomodulatory therapies for high-risk KD patients, and provide direction for future etiologic studies.

Indexed as

TranscriptomeAntigen PresentationArteritisBiomarkersCase-Control StudiesCluster AnalysisComputational BiologyCoronary Artery DiseaseCytokinesDendritic CellsFemaleGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingHumansInfantBiomarkersCytokinesIntercellular Signaling Peptides and ProteinsInterferon Regulatory FactorsInterferon Type IReceptors, Pattern Recognition

Identifiers

PMID26679344
PMCPMC4683744
OpenAlexW2216151332

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.