Evidence map›Paper›PMID 26678797›Full record

ArticleNature communications2015

ATP hydrolysis assists phosphate release and promotes reaction ordering in F1-ATPase.

Chun-Biu Li, Hiroshi Ueno, Rikiya Watanabe, Hiroyuki Noji, Tamiki Komatsuzaki

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. The lower γ region supports forward rotation in the latter half of the 80° substep of FProtein science : a publication of the Protein Society · 2026
    Article
  2. Functional and structural characterization of FProtein science : a publication of the Protein Society · 2025
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  3. Article
  4. Catalytic dwell oscillations complete the FCommunications chemistry · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Patterns (New York, N.Y.) · 2021
    Article
  10. The 3 × 120° rotary mechanism ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Article
  12. Review
  13. Rotary catalysis of bovine mitochondrial FProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Method to extract multiple states in FProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Structure and dynamics of rotary VCellular and molecular life sciences : CMLS · 2018
    Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Chun-Biu LiResearch Institute for Electronic Science, Hokkaido University, Sapporo 001-0020, Japan.
Hiroshi UenoDepartment of Applied Chemistry, Graduate School of Engineering, University of Tokyo, Tokyo 113-8656, Japan.
Rikiya WatanabeDepartment of Applied Chemistry, Graduate School of Engineering, University of Tokyo, Tokyo 113-8656, Japan.
Hiroyuki NojiDepartment of Applied Chemistry, Graduate School of Engineering, University of Tokyo, Tokyo 113-8656, Japan.
Tamiki KomatsuzakiResearch Institute for Electronic Science, Hokkaido University, Sapporo 001-0020, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

F1-ATPase (F1) is a rotary motor protein that can efficiently convert chemical energy to mechanical work of rotation via fine coordination of its conformational motions and reaction sequences. Compared with reactant binding and product release, the ATP hydrolysis has relatively little contributions to the torque and chemical energy generation. To scrutinize possible roles of ATP hydrolysis, we investigate the detailed statistics of the catalytic dwells from high-speed single wild-type F1 observations. Here we report a small rotation during the catalytic dwell triggered by the ATP hydrolysis that is indiscernible in previous studies. Moreover, we find in freely rotating F1 that ATP hydrolysis is followed by the release of inorganic phosphate with low synthesis rates. Finally, we propose functional roles of the ATP hydrolysis as a key to kinetically unlock the subsequent phosphate release and promote the correct reaction ordering.

Indexed as

Adenosine TriphosphateCatalysisComputer SimulationHydrolysisKineticsModels, MolecularMolecular Motor ProteinsMonte Carlo MethodPhosphatesProton-Translocating ATPasesRotationTorqueAdenosine TriphosphateMolecular Motor ProteinsPhosphatesProton-Translocating ATPases

Identifiers

PMID26678797
PMCPMC4703894

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.