Evidence map›Paper›PMID 26678784›Full record

ArticleScientific reports2015

Secretome analysis of chickpea reveals dynamic extracellular remodeling and identifies a Bet v1-like protein, CaRRP1 that participates in stress response.

Sonika Gupta, Vijay Wardhan, Amit Kumar, Divya Rathi, Aarti Pandey, Subhra Chakraborty, Niranjan Chakraborty

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  3. International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sonika GuptaNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Vijay WardhanNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Amit KumarNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Divya RathiNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Aarti PandeyNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Subhra ChakrabortyNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Niranjan ChakrabortyNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
National Institute of Plant Genome Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Secreted proteins maintain cell structure and biogenesis besides acting in signaling events crucial for cellular homeostasis during stress adaptation. To understand the underlying mechanism of stress-responsive secretion, the dehydration-responsive secretome was developed from suspension-cultured cells of chickpea. Cell viability of the suspension culture remained unaltered until 96 h, which gradually declined at later stages of dehydration. Proteomic analysis led to the identification of 215 differentially regulated proteins, involved in a variety of cellular functions that include metabolism, cell defence, and signal transduction suggesting their concerted role in stress adaptation. One-third of the secreted proteins were devoid of N-terminal secretion signals suggesting a non-classical secretory route. Screening of the secretome identified a leaderless Bet v 1-like protein, designated CaRRP1, the export of which was inhibited by brefeldin A. We investigated the gene structure and genomic organization and demonstrated that CaRRP1 may be involved in stress response. Its expression was positively associated with abiotic and biotic stresses. CaRRP1 could complement the aberrant growth phenotype of yeast mutant, deficient in vesicular transport, indicating a partial overlap of protein secretion and stress response. Our study provides the most comprehensive analysis of dehydration-responsive secretome and the complex metabolic network operating in plant extracellular space.

Indexed as

ProteomicsStress, Physiological3' Untranslated RegionsAmino Acid SequenceBase SequenceBrefeldin ACatalaseCell SurvivalChromatography, High Pressure LiquidCicerMolecular Sequence DataNicotianaPhylogenyPlant CellsPlant LeavesPlant Proteins3' Untranslated RegionsBrefeldin ACatalasePlant ProteinsProteome

Identifiers

PMID26678784
PMCPMC4683448
OpenAlexW2412909592

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.