Evidence map›Paper›PMID 26678094›Full record

ArticleBMC biology2015

A rapid and affordable screening platform for membrane protein trafficking.

Joshua C Snyder, Thomas F Pack, Lauren K Rochelle, Subhasish K Chakraborty, Ming Zhang, Andrew W Eaton, Yushi Bai, Lauren A Ernst, Larry S Barak, Alan S Waggoner and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Noncanonical scaffolding of GScience (New York, N.Y.) · 2021
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  6. Review
  7. Article
  8. Vaccine-Induced Memory CD8Clinical cancer research : an official journal of the American Association for Cancer Research · 2019
    Article
  9. Single-molecule labeling for studying trafficking of renal transporters.American journal of physiology. Renal physiology · 2018
    Review
  10. hThe Journal of experimental medicine · 2018
    Article
  11. Article
  12. Fluorogenic Labeling Strategies for Biological Imaging.International journal of molecular sciences · 2017
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Immunohistochemical Analysis of the Stem Cell Marker LGR5 in Pediatric Liver Disease.Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Joshua C SnyderDepartments of Cell Biology, Duke University Medical Center, Durham, NC, 27710, USA.
Thomas F PackDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, USA.
Lauren K RochelleDepartments of Cell Biology, Duke University Medical Center, Durham, NC, 27710, USA.
Subhasish K ChakrabortyMolecular Biosensor and Imaging Center, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.
Ming ZhangDepartment of Biology, Molecular Biosensor and Imaging Center, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.
Andrew W EatonDepartments of Cell Biology, Duke University Medical Center, Durham, NC, 27710, USA.
Yushi BaiDepartments of Cell Biology, Duke University Medical Center, Durham, NC, 27710, USA.
Lauren A ErnstMolecular Biosensor and Imaging Center, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.
Larry S BarakDepartments of Cell Biology, Duke University Medical Center, Durham, NC, 27710, USA.
Alan S WaggonerDepartment of Biology, Molecular Biosensor and Imaging Center, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.
Marc G CaronDepartments of Cell Biology, Duke University Medical Center, Durham, NC, 27710, USA. marc.caron@duke.edu.
Duke University Hospital · USCarnegie Mellon University · USDuke Medical Center · USImaging Center · USDuke University · US

Funding

Screening CoreU19MH082441 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CARON, MARC G., ROTH, BRYAN L. · 2007 to 2016
$15.2M
Pharmacological Sciences Training ProgramT32GM007105 · NIGMS · DUKE UNIVERSITY · PI KUHN, CYNTHIA M · 1985 to 2019
$9.0M
Clinical Oncology Research Career Development ProgramK12CA100639 · NCI · DUKE UNIVERSITY · PI LYERLY, HERBERT KIM · 2004 to 2013
$8.0M
Akt/GSK-3 Signaling Cascade and the Actions of DopamineR37MH073853 · NIMH · DUKE UNIVERSITY · PI CARON, MARC G. · 2011 to 2020
$6.4M
Fluorescent Biosensors for Networks and PathwaysU54GM103529 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI WAGGONER, ALAN S. · 2012 to 2013
$6.3M
Science PlanP30DA029925 · NIDA · DUKE UNIVERSITY · PI CARON, MARC G. · 2010 to 2018
$6.2M
A Cancer Rainbow Mouse for Simultaneous Assessment of Multiple OncogenesR33CA191198 · NCI · DUKE UNIVERSITY · PI CARON, MARC G. · 2015 to 2017
$1.2M
A Cancer Rainbow Mouse for the Simultaneous Assessment of Multiple OncogenesR21CA173245 · NCI · DUKE UNIVERSITY · PI CARON, MARC G. · 2012 to 2013
$476k
NCI NIH HHS 1R21CA173245NCI NIH HHS K12 CA100639NCI NIH HHS NCI 5 K12-CA100639-10NCI NIH HHS NIH 1R33-CA191198NCI NIH HHS R21 CA173245NCI NIH HHS R33 CA191198NIDA NIH HHS P30 DA029925NIGMS NIH HHS NIH 5U54GM103529NIGMS NIH HHS T32 GM007105NIGMS NIH HHS U54 GM103529NIMH NIH HHS 2U19-MH082441NIMH NIH HHS 5R37-MH073853NIMH NIH HHS R37 MH073853NIMH NIH HHS U19 MH082441PHS HHS NIDA P30 5P30DA29925PHS HHS NIGMS 5T32GM007105-39
6 · The paper itself

Abstract

backgroundMembrane proteins regulate a diversity of physiological processes and are the most successful class of targets in drug discovery. However, the number of targets adequately explored in chemical space and the limited resources available for screening are significant problems shared by drug-discovery centers and small laboratories. Therefore, a low-cost and universally applicable screen for membrane protein trafficking was developed.

resultsThis high-throughput screen (HTS), termed IRFAP-HTS, utilizes the recently described MarsCy1-fluorogen activating protein and the near-infrared and membrane impermeant fluorogen SCi1. The cell surface expression of MarsCy1 epitope-tagged receptors can be visualized by simple addition of SCi1. User-friendly, rapid, and quantitative detection occurs on a standard infrared western-blotting scanner. The reliability and robustness of IRFAP-HTS was validated by confirming human vasopressin-2 receptor and dopamine receptor-2 trafficking in response to agonist or antagonist. The IRFAP-HTS screen was deployed against the leucine-rich G protein-coupled receptor-5 (Lgr5). Lgr5 is expressed in stem cells, modulates Wnt/ß-catenin signaling, and is therefore a promising drug target. However, small molecule modulators have yet to be reported. The constitutive internalization of Lgr5 appears to be one primary mode through which its function is regulated. Therefore, IRFAP-HTS was utilized to screen 11,258 FDA-approved and drug-like small molecules for those that antagonize Lgr5 internalization. Glucocorticoids were found to potently increase Lgr5 expression at the plasma membrane.

conclusionThe IRFAP-HTS platform provides a versatile solution for screening more targets with fewer resources. Using only a standard western-blotting scanner, we were able to screen 5,000 compounds per hour in a robust and quantitative assay. Multi-purposing standardly available laboratory equipment eliminates the need for idiosyncratic and more expensive high-content imaging systems. The modular and user-friendly IRFAP-HTS is a significant departure from current screening platforms. Small laboratories will have unprecedented access to a robust and reliable screening platform and will no longer be limited by the esoteric nature of assay development, data acquisition, and post-screening analysis. The discovery of glucocorticoids as modulators for Lgr5 trafficking confirms that IRFAP-HTS can accelerate drug-discovery and drug-repurposing for even the most obscure targets.

Indexed as

Drug DiscoveryHEK293 CellsHigh-Throughput Screening AssaysHumansMembrane ProteinsProtein TransportReproducibility of ResultsMembrane Proteins

Identifiers

PMID26678094
PMCPMC4683952
OpenAlexW2200390015

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.