Evidence map›Paper›PMID 26677218›Full record

ArticleThe Journal of biological chemistry2016

Phototransduction Influences Metabolic Flux and Nucleotide Metabolism in Mouse Retina.

Jianhai Du, Austin Rountree, Whitney M Cleghorn, Laura Contreras, Ken J Lindsay, Martin Sadilek, Haiwei Gu, Danijel Djukovic, Dan Raftery, Jorgina Satrústegui and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 1 synthesis or guideline pooled it, 103 citations in OpenAlex.

  1. Metabolomics in Age-Related Macular Degeneration: A Systematic Review.Investigative ophthalmology & visual science · 2020
    Pooled it
  2. Article
  3. Article
  4. Metabolomics Effects of Folding Correction in Retinitis Pigmentosa Rhodopsin Mutant P23A.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  5. Article
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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Jianhai DuFrom the Department of Biochemistry, Department of Ophthalmology, University of Washington, Seattle, Washington 98109.
Austin RountreeDiabetes and Obesity Center of Excellence.
Whitney M CleghornFrom the Department of Biochemistry.
Laura ContrerasDepartment of Molecular Biology, Centre for Molecular Biology Severo Ochoa, Universidad Autonoma de Madrid-Consejo Superior de Investigaciones Científicas, CIBER of Rare Diseases (CIBERER), and Health Research Institute Jimenez Diaz Foundation, Autonomous University of Madrid, 28049 Madrid, Spain.
Ken J LindsayFrom the Department of Biochemistry.
Martin SadilekDepartment of Chemistry.
Haiwei GuNorthwest Metabolomics Research Center, Department of Anesthesiology and Pain Medicine.
Danijel DjukovicNorthwest Metabolomics Research Center, Department of Anesthesiology and Pain Medicine.
Dan RafteryNorthwest Metabolomics Research Center, Department of Anesthesiology and Pain Medicine.
Jorgina SatrústeguiDepartment of Molecular Biology, Centre for Molecular Biology Severo Ochoa, Universidad Autonoma de Madrid-Consejo Superior de Investigaciones Científicas, CIBER of Rare Diseases (CIBERER), and Health Research Institute Jimenez Diaz Foundation, Autonomous University of Madrid, 28049 Madrid, Spain.
Mark KanowFrom the Department of Biochemistry.
Lawrence ChanBernard and Shirlee Brown Glaucoma Laboratory and Barbara and Donald Jonas Stem Cell Laboratory, Department of Ophthalmology, Columbia University, New York, New York, and.
Stephen H TsangBernard and Shirlee Brown Glaucoma Laboratory and Barbara and Donald Jonas Stem Cell Laboratory, Department of Ophthalmology, Columbia University, New York, New York, and Department of Pathology and Cell Biology and Institute of Human Nutrition, Columbia University, New York, New York 10032.
Ian R SweetDiabetes and Obesity Center of Excellence.
James B HurleyFrom the Department of Biochemistry, Department of Ophthalmology, University of Washington, Seattle, Washington 98109, jbhhh@uw.edu.
University of Washington · USNetherlands Metabolomics Centre · NLColumbia University · USConsejo Superior de Investigaciones Científicas · ESSeattle University · US

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Tomas Vaisar · 1986 to 2026
$41.4M
Vision Research CoreP30EY001730 · NEI · UNIVERSITY OF WASHINGTON · PI MAUREEN E NEITZ · 1985 to 2026
$23.5M
ROD AND CONE RESPONSE CHARACTERISTICSR01EY006641 · NEI · UNIVERSITY OF WASHINGTON · PI JAMES Bryant HURLEY · 1986 to 2026
$10.2M
Control of Photoreceptor MetabolismR01EY017863 · NEI · UNIVERSITY OF WASHINGTON · PI JAMES Bryant HURLEY · 2007 to 2026
$6.4M
BINDING OF EXPRESSED ARRESTIN TO RHODOPSINF32EY006641 · NEI · UNIVERSITY OF FLORIDA · PI POPP, MICHAEL P · 1995 to 1997
–
NEI NIH HHS EY001730NEI NIH HHS EY017863NEI NIH HHS EY06641NEI NIH HHS F32 EY006641NEI NIH HHS P30 EY001730NEI NIH HHS R01 EY006641NEI NIH HHS R01 EY017863NIDDK NIH HHS P30 DK017047
6 · The paper itself

Abstract

Production of energy in a cell must keep pace with demand. Photoreceptors use ATP to maintain ion gradients in darkness, whereas in light they use it to support phototransduction. Matching production with consumption can be accomplished by coupling production directly to consumption. Alternatively, production can be set by a signal that anticipates demand. In this report we investigate the hypothesis that signaling through phototransduction controls production of energy in mouse retinas. We found that respiration in mouse retinas is not coupled tightly to ATP consumption. By analyzing metabolic flux in mouse retinas, we also found that phototransduction slows metabolic flux through glycolysis and through intermediates of the citric acid cycle. We also evaluated the relative contributions of regulation of the activities of α-ketoglutarate dehydrogenase and the aspartate-glutamate carrier 1. In addition, a comprehensive analysis of the retinal metabolome showed that phototransduction also influences steady-state concentrations of 5'-GMP, ribose-5-phosphate, ketone bodies, and purines.

Indexed as

Light Signal TransductionAmino Acid Transport Systems, AcidicAnimalsAntiportersCalcium SignalingCitric Acid CycleCyclic GMPElectron TransportEnergy MetabolismEye ProteinsGlycolysisGTP-Binding Protein alpha SubunitsHeterotrimeric GTP-Binding ProteinsKetoglutarate Dehydrogenase ComplexLightMetabolomeAmino Acid Transport Systems, AcidicAntiportersaspartate-glutamate carrierCyclic GMPEye ProteinsGnat1 protein, mouseGnat2 protein, mouseGTP-Binding Protein alpha SubunitsHeterotrimeric GTP-Binding ProteinsKetoglutarate Dehydrogenase ComplexTransducinanaerobic metabolismcalciummitochondriaphotoreceptorphototransductionretina

Identifiers

PMID26677218
PMCPMC4813492
OpenAlexW2218890016

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.