Evidence map›Paper›PMID 26677030›Full record

ArticleJournal of cancer research and clinical oncology2016

Identification of genomic mutations associated with clinical outcomes of induction chemotherapy in patients with head and neck squamous cell carcinoma.

Chan-Young Ock, Bongjun Son, Bhumsuk Keam, Seung-Youn Lee, Jaewoo Moon, Hwanjong Kwak, Sehui Kim, Tae Min Kim, Yoon Kyung Jeon, Seong Keun Kwon and 7 more

Abstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Chan-Young OckDepartment of Internal Medicine, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul, 110-744, Korea.
Bongjun SonTheragenEtex Bio Institute, TheragenEtex, Suwon, Korea.
Bhumsuk KeamDepartment of Internal Medicine, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul, 110-744, Korea. bhumsuk@snu.ac.kr.
Seung-Youn LeeTheragenEtex Bio Institute, TheragenEtex, Suwon, Korea.
Jaewoo MoonTheragenEtex Bio Institute, TheragenEtex, Suwon, Korea.
Hwanjong KwakTheragenEtex Bio Institute, TheragenEtex, Suwon, Korea.
Sehui KimDepartment of Pathology, Seoul National University Hospital, Seoul, Korea.
Tae Min KimDepartment of Internal Medicine, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul, 110-744, Korea.
Yoon Kyung JeonDepartment of Pathology, Seoul National University Hospital, Seoul, Korea.
Seong Keun KwonCancer Research Institute, Seoul National University College of Medicine, Seoul, Korea.
J Hun HahCancer Research Institute, Seoul National University College of Medicine, Seoul, Korea.
Se-Hoon LeeDepartment of Internal Medicine, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul, 110-744, Korea.
Tack-Kyun KwonDepartment of Otorhinolaryngology-Head and Neck Surgery, Seoul National University Hospital, Seoul, Korea.
Dong-Wan KimDepartment of Internal Medicine, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul, 110-744, Korea.
Hong-Gyun WuDepartment of Radiation Oncology, Seoul National University Hospital, Seoul, Korea.
Myung-Whun SungCancer Research Institute, Seoul National University College of Medicine, Seoul, Korea.
Dae Seog HeoDepartment of Internal Medicine, Seoul National University Hospital, 101 Daehak-ro, Jongno-gu, Seoul, 110-744, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeWe performed deep sequencing of target genes in head and neck squamous cell carcinoma (HNSCC) tumors to identify somatic mutations that are associated with induction chemotherapy (IC) response.

methodsPatients who were diagnosed with HNSCC were retrospectively identified. Patients who were treated with IC were divided into two groups: good responders and poor responders by tumor response and progression-free survival. Targeted gene sequencing for 2404 somatic mutations of 44 genes was performed on HNSCC tissues. Mutations with total coverage of <500 were excluded, and the cutoff for altered allele frequency was >10 %.

resultsOf the 71 patients, 45 were treated upfront with IC. Mean total coverage was 1941 per locus, and 42.2 % of tumors had TP53 mutations. Thirty-three mutations in TP53, NOTCH3, FGFR2, FGFR3, ATM, EGFR, MET, PTEN, FBXW7, SYNE1, and SUFU were frequently altered in poor responders. Among the patients who were treated with IC, those with unfavorable genomic profiles had significantly poorer overall survival than those without unfavorable genomic profiles (hazard ratio 6.45, 95 % confidence interval 2.07-20.10, P < 0.001).

conclusionsComprehensive analysis of mutation frequencies identified unfavorable genomic profiles, and the patients without unfavorable genomic profiles can obtain clinical benefits from IC in patients with HNSCC.

Indexed as

Gene Expression ProfilingMutationAdultAgedAged, 80 and overAntineoplastic Combined Chemotherapy ProtocolsCarcinoma, Squamous CellChemoradiotherapyClass I Phosphatidylinositol 3-KinasesDNA, NeoplasmFemaleHead and Neck NeoplasmsHigh-Throughput Nucleotide SequencingHumansInduction ChemotherapyMaleClass I Phosphatidylinositol 3-KinasesDNA, NeoplasmPhosphatidylinositol 3-KinasesPIK3CA protein, humanTP53 protein, humanTumor Suppressor Protein p53Concurrent chemoradiotherapyHead and neck cancerInduction chemotherapySurvivalTargeted gene sequencing

Identifiers

PMID26677030
PMCPMC11818954

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.