Evidence map›Paper›PMID 26675724›Full record

ArticleNature2016

The C. elegans adult neuronal IIS/FOXO transcriptome reveals adult phenotype regulators.

Rachel Kaletsky, Vanisha Lakhina, Rachel Arey, April Williams, Jessica Landis, Jasmine Ashraf, Coleen T Murphy

Abstract read
In one paragraph

Article in Nature, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. bioRxiv : the preprint server for biology · 2026
    Article
  5. Exercise-Induced Differential Transcriptional Output of AMPK Signaling Improves Axon Regeneration and Functional Recovery.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article
  6. Article
  7. A gene expression atlas of a juvenile nervous system.bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Genes & development · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. International journal of molecular sciences · 2024
    Article
  19. Article
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Rachel KaletskyDepartment of Molecular Biology &LSI Genomics, Princeton University, Princeton, New Jersey 08544, USA.
Vanisha LakhinaDepartment of Molecular Biology &LSI Genomics, Princeton University, Princeton, New Jersey 08544, USA.
Rachel AreyDepartment of Molecular Biology &LSI Genomics, Princeton University, Princeton, New Jersey 08544, USA.
April WilliamsDepartment of Molecular Biology &LSI Genomics, Princeton University, Princeton, New Jersey 08544, USA.
Jessica LandisDepartment of Molecular Biology &LSI Genomics, Princeton University, Princeton, New Jersey 08544, USA.
Jasmine AshrafDepartment of Molecular Biology &LSI Genomics, Princeton University, Princeton, New Jersey 08544, USA.
Coleen T MurphyDepartment of Molecular Biology &LSI Genomics, Princeton University, Princeton, New Jersey 08544, USA.

Funding

Quantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9M
Toward the Tissue-ome: A Map of the C. elegans Cell-specific TranscriptomeDP1GM119167 · NIGMS · PRINCETON UNIVERSITY · PI MURPHY, COLEEN TARA · 2015 to 2019
$4.0M
Molecular Mechanisms Regulating Age-Related Cognitive Decline in C. elegansR01AG034446 · NIA · PRINCETON UNIVERSITY · PI MURPHY, COLEEN TARA · 2009 to 2019
$3.1M
Identifying postsynaptic regulators of long-term memory in Caenorhabditis elegansF32AG046106 · NIA · PRINCETON UNIVERSITY · PI AREY, RACHEL NICOLE · 2014 to 2017
$167k
NHGRI NIH HHS T32 HG003284NIA NIH HHS F32 AG046106NIA NIH HHS R01 AG034446NIGMS NIH HHS DP1 GM119167
6 · The paper itself

Abstract

Insulin/insulin-like growth factor signalling (IIS) is a critical regulator of an organism's most important biological decisions from growth, development, and metabolism to reproduction and longevity. It primarily does so through the activity of the DAF-16 transcription factor (forkhead box O (FOXO) homologue), whose global targets were identified in Caenorhabditis elegans using whole-worm transcriptional analyses more than a decade ago. IIS and FOXO also regulate important neuronal and adult behavioural phenotypes, such as the maintenance of memory and axon regeneration with age, in both mammals and C. elegans, but the neuron-specific IIS/FOXO targets that regulate these functions are still unknown. By isolating adult C. elegans neurons for transcriptional profiling, we identified both the wild-type and IIS/FOXO mutant adult neuronal transcriptomes for the first time. IIS/FOXO neuron-specific targets are distinct from canonical IIS/FOXO-regulated longevity and metabolism targets, and are required for extended memory in IIS daf-2 mutants. The activity of the forkhead transcription factor FKH-9 in neurons is required for the ability of daf-2 mutants to regenerate axons with age, and its activity in non-neuronal tissues is required for the long lifespan of daf-2 mutants. Together, neuron-specific and canonical IIS/FOXO-regulated targets enable the coordinated extension of neuronal activities, metabolism, and longevity under low-insulin signalling conditions.

Indexed as

PhenotypeSignal TransductionTranscriptomeAgingAnimalsAxonsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell SeparationForkhead Transcription FactorsInsulinLongevityMechanotransduction, CellularMemoryMutationNeuronsCaenorhabditis elegans Proteinsdaf-16 protein, C elegansfkh-9 protein, C elegansForkhead Transcription FactorsInsulinSomatomedins

Identifiers

PMID26675724
PMCPMC4708089

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.