Evidence map›Paper›PMID 26674306›Full record

ArticleBMC plant biology2015

Metabolomics of dates (Phoenix dactylifera) reveals a highly dynamic ripening process accounting for major variation in fruit composition.

Ilhame Diboun, Sweety Mathew, Maryam Al-Rayyashi, Mohamed Elrayess, Maria Torres, Anna Halama, Michaël Méret, Robert P Mohney, Edward D Karoly, Joel Malek and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Ilhame DibounDepartment of Physiology and Biophysics, Weill Cornell Medical College, Qatar Foundation - Education City, PO Box 24144, Doha, Qatar. ild2003@qatar-med.cornell.edu.
Sweety MathewDepartment of Physiology and Biophysics, Weill Cornell Medical College, Qatar Foundation - Education City, PO Box 24144, Doha, Qatar. swm2004@qatar-med.cornell.edu.
Maryam Al-RayyashiGenomics Laboratory, Weill Cornell Medical College, Doha, Qatar. m.alrayyashi@googlemail.com.
Mohamed ElrayessLife sciences research division, ADLQ, Doha, Qatar. melrayess@adlqatar.qa.
Maria TorresGenomics Laboratory, Weill Cornell Medical College, Doha, Qatar. mft2002@qatar-med.cornell.edu.
Anna HalamaDepartment of Physiology and Biophysics, Weill Cornell Medical College, Qatar Foundation - Education City, PO Box 24144, Doha, Qatar. amh2025@qatar-med.cornell.edu.
Michaël MéretMetaSysX GmbH, Potsdam, Germany. meret@metasysx.eu.
Robert P MohneyMetabolon, Inc., Durham, USA. RMohney@metabolon.com.
Edward D KarolyMetabolon, Inc., Durham, USA. EKaroly@metabolon.com.
Joel MalekGenomics Laboratory, Weill Cornell Medical College, Doha, Qatar. jom2042@qatar-med.cornell.edu.
Karsten SuhreDepartment of Physiology and Biophysics, Weill Cornell Medical College, Qatar Foundation - Education City, PO Box 24144, Doha, Qatar. jom2042@qatar-med.cornell.edu.
Weill Cornell Medical College in Qatar · QAMetabolon (United States) · USAnti-Doping Laboratory · QA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDates are tropical fruits with appreciable nutritional value. Previous attempts at global metabolic characterization of the date metabolome were constrained by small sample size and limited geographical sampling. In this study, two independent large cohorts of mature dates exhibiting substantial diversity in origin, varieties and fruit processing conditions were measured by metabolomics techniques in order to identify major determinants of the fruit metabolome.

resultsMultivariate analysis revealed a first principal component (PC1) significantly associated with the dates' countries of production. The availability of a smaller dataset featuring immature dates from different development stages served to build a model of the ripening process in dates, which helped reveal a strong ripening signature in PC1. Analysis revealed enrichment in the dry type of dates amongst fruits with early ripening profiles at one end of PC1 as oppose to an overrepresentation of the soft type of dates with late ripening profiles at the other end of PC1. Dry dates are typical to the North African region whilst soft dates are more popular in the Gulf region, which partly explains the observed association between PC1 and geography. Analysis of the loading values, expressing metabolite correlation levels with PC1, revealed enrichment patterns of a comprehensive range of metabolite classes along PC1. Three distinct metabolic phases corresponding to known stages of date ripening were observed: An early phase enriched in regulatory hormones, amines and polyamines, energy production, tannins, sucrose and anti-oxidant activity, a second phase with on-going phenylpropanoid secondary metabolism, gene expression and phospholipid metabolism and a late phase with marked sugar dehydration activity and degradation reactions leading to increased volatile synthesis.

conclusionsThese data indicate the importance of date ripening as a main driver of variation in the date metabolome responsible for their diverse nutritional and economical values. The biochemistry of the ripening process in dates is consistent with other fruits but natural dryness may prevent degenerative senescence in dates following ripening. Based on the finding that mature dates present varying extents of ripening, our survey of the date metabolome essentially revealed snapshots of interchanging metabolic states during ripening empowering an in-depth characterization of underlying biology.

Indexed as

MetabolomeChromatography, High Pressure LiquidFruitGas Chromatography-Mass SpectrometryMetabolomicsPhoeniceaePlant ProteinsTunisiaPlant Proteins

Identifiers

PMID26674306
PMCPMC4681049
OpenAlexW2207112964

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.