Evidence map›Paper›PMID 26673720›Full record

ArticleNucleic acids research2016

Single molecule detection of PARP1 and PARP2 interaction with DNA strand breaks and their poly(ADP-ribosyl)ation using high-resolution AFM imaging.

Maria V Sukhanova, Sanae Abrakhi, Vandana Joshi, David Pastre, Mikhail M Kutuzov, Rashid O Anarbaev, Patrick A Curmi, Loic Hamon, Olga I Lavrik

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
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  6. CoNanoscale · 2025
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  11. Poly ADP-ribose signaling is dysregulated in Huntington disease.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  20. PARP3 Affects Nucleosome Compaction Regulation.International journal of molecular sciences · 2023
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Maria V SukhanovaInstitute of Chemical Biology and Fundamental Medicine, 630090, Novosibirsk, Russian Federation INSERM, U1204, Laboratoire Structure-Activité des Biomolécules Normales et Pathologiques, Université d'Evry-Val-d'Essonne, F-91025 Evry, France.
Sanae AbrakhiINSERM, U1204, Laboratoire Structure-Activité des Biomolécules Normales et Pathologiques, Université d'Evry-Val-d'Essonne, F-91025 Evry, France.
Vandana JoshiINSERM, U1204, Laboratoire Structure-Activité des Biomolécules Normales et Pathologiques, Université d'Evry-Val-d'Essonne, F-91025 Evry, France.
David PastreINSERM, U1204, Laboratoire Structure-Activité des Biomolécules Normales et Pathologiques, Université d'Evry-Val-d'Essonne, F-91025 Evry, France.
Mikhail M KutuzovInstitute of Chemical Biology and Fundamental Medicine, 630090, Novosibirsk, Russian Federation.
Rashid O AnarbaevInstitute of Chemical Biology and Fundamental Medicine, 630090, Novosibirsk, Russian Federation Novosibirsk State University, 630090, Novosibirsk, Russian Federation.
Patrick A CurmiINSERM, U1204, Laboratoire Structure-Activité des Biomolécules Normales et Pathologiques, Université d'Evry-Val-d'Essonne, F-91025 Evry, France.
Loic HamonINSERM, U1204, Laboratoire Structure-Activité des Biomolécules Normales et Pathologiques, Université d'Evry-Val-d'Essonne, F-91025 Evry, France loic.hamon@univ-evry.fr.
Olga I LavrikInstitute of Chemical Biology and Fundamental Medicine, 630090, Novosibirsk, Russian Federation Novosibirsk State University, 630090, Novosibirsk, Russian Federation lavrik@niboch.nsc.ru.
Laboratoire des Biomolécules · FRInstitute of Chemical Biology and Fundamental Medicine · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PARP1 and PARP2 are implicated in the synthesis of poly(ADP-ribose) (PAR) after detection of DNA damage. The specificity of PARP1 and PARP2 interaction with long DNA fragments containing single- and/or double-strand breaks (SSBs and DSBs) have been studied using atomic force microscopy (AFM) imaging in combination with biochemical approaches. Our data show that PARP1 localizes mainly on DNA breaks and exhibits a slight preference for nicks over DSBs, although the protein has a moderately high affinity for undamaged DNA. In contrast to PARP1, PARP2 is mainly detected at a single DNA nick site, exhibiting a low level of binding to undamaged DNA and DSBs. The enhancement of binding affinity of PARP2 for DNA containing a single nick was also observed using fluorescence titration. AFM studies reveal that activation of both PARPs leads to the synthesis of highly branched PAR whose size depends strongly on the presence of SSBs and DSBs for PARP1 and of SSBs for PARP2. The initial affinity between the PARP1, PARP2 and the DNA damaged site appears to influence both the size of the PAR synthesized and the time of residence of PARylated PARP1 and PARP2 on DNA damages.

Indexed as

DNA Breaks, Double-StrandedDNA Breaks, Single-StrandedDNA RepairCloning, MolecularDNAEscherichia coliGene ExpressionHumansMagnesiumMicroscopy, Atomic ForceMolecular ImagingPlasmidsPoly Adenosine Diphosphate RibosePoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesPutrescineDNAMagnesiumPARP1 protein, humanPARP2 protein, humanPoly Adenosine Diphosphate RibosePoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesPutrescineRecombinant ProteinsSpermidine

Identifiers

PMID26673720
PMCPMC4824093
OpenAlexW2232592265

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.