Evidence map›Paper›PMID 26673699›Full record

ArticleNucleic acids research2016

Cancer-predisposition gene KLLN maintains pericentric H3K9 trimethylation protecting genomic stability.

Emily A Nizialek, Madhav Sankunny, Farshad Niazi, Charis Eng

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Micronuclei: origins, assays, mechanisms, diseases and treatments.Signal transduction and targeted therapy · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Emily A NizialekGenomic Medicine Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA Department of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio 44106, USA.
Madhav SankunnyGenomic Medicine Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA.
Farshad NiaziGenomic Medicine Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA.
Charis EngGenomic Medicine Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA Department of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, Ohio 44106, USA Taussig Cancer Institute, Cleveland Clinic, Cleveland, Ohio 44195, USA Germline High Risk Focus Group, CASE Comprehensive Cancer Center, Case Western Reserve University, Cleveland, Ohio 44106, USA engc@ccf.org.
Cleveland Clinic · USCase Western Reserve University · USCleveland Clinic Lerner College of Medicine · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
Selective Modulation of Thyroidal RadioiodineP01CA124570 · NCI · OHIO STATE UNIVERSITY · PI KIRSCHNER, LAWRENCE S · 2008 to 2017
$23.4M
Germline KLLN Alterations in PTEN Mutation Negative Cowden SyndromeF30CA168151 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI NIZIALEK, EMILY ALISON · 2013 to 2015
$130k
NCI NIH HHS F30 CA168151NCI NIH HHS P01 CA124570NIGMS NIH HHS T32 GM007250
6 · The paper itself

Abstract

Maintenance of proper chromatin states and genomic stability is vital for normal development and health across a range of organisms. Here, we report on the role of KLLN in maintenance of pericentric H3K9 trimethylation (H3K9me3) and genomic stability. Germline hypermethylation of KLLN, a gene uncovered well after the human genome project, has been linked to Cowden cancer-predisposition syndrome (CS) in PTEN wild-type cases. KLLN first identified as a p53-dependent tumor suppressor gene, was believed to bind randomly to DNA and cause S-phase arrest. Using chromatin immunoprecipitation-based sequencing (ChIP-seq), we demonstrated that KLLN binds to DNA regions enriched with H3K9me3. KLLN overexpression correlated with increased H3K9 methyltransferase activity and increased global H3K9me3, while knockdown of KLLN had an opposite effect. We also found KLLN to localize to pericentric regions, with loss of KLLN resulting in dysregulation of pericentric heterochromatin, with consequent chromosomal instability manifested by increased micronuclei formation and numerical chromosomal aberrations. Interestingly, we show that KLLN interacts with DBC1, with consequent abrogation of DBC1 inhibition of SUV39H1, a H3K9 methyltransferase, suggesting the mode of KLLN regulating H3K9me3. These results suggest a critical role for KLLN as a potential regulator of pericentric heterochromatin formation, genomic stability and gene expression.

Indexed as

Adaptor Proteins, Signal TransducingCell Line, TumorDNA-Binding ProteinsDNA MethylationGenomic InstabilityHamartoma Syndrome, MultipleHeterochromatinHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHumansMCF-7 CellsMethyltransferasesNeoplasmsPromoter Regions, GeneticRepressor ProteinsRNA InterferenceAdaptor Proteins, Signal TransducingCCAR2 protein, humanDNA-Binding ProteinsHeterochromatinHistone-Lysine N-MethyltransferaseHistone MethyltransferasesKLLN protein, humanMethyltransferasesRepressor ProteinsRNA, Small InterferingSUV39H1 protein, humanTP53 protein, humanTumor Suppressor Protein p53Tumor Suppressor Proteins

Identifiers

PMID26673699
PMCPMC4856962
OpenAlexW2346828465

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.