Evidence map›Paper›PMID 26673527›Full record

ArticleScientific reports2015

Comparative transcriptome analysis of grapevine in response to copper stress.

Xiangpeng Leng, Haifeng Jia, Xin Sun, Lingfei Shangguan, Qian Mu, Baoju Wang, Jinggui Fang

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

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  18. Adaptive Responses ofInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiangpeng LengCollege of Horticulture, Nanjing Agricultural University, Tongwei Road 6, Nanjing 210095, PR. China.
Haifeng JiaCollege of Horticulture, Nanjing Agricultural University, Tongwei Road 6, Nanjing 210095, PR. China.
Xin SunCollege of Horticulture, Nanjing Agricultural University, Tongwei Road 6, Nanjing 210095, PR. China.
Lingfei ShangguanCollege of Horticulture, Nanjing Agricultural University, Tongwei Road 6, Nanjing 210095, PR. China.
Qian MuCollege of Horticulture, Nanjing Agricultural University, Tongwei Road 6, Nanjing 210095, PR. China.
Baoju WangCollege of Horticulture, Nanjing Agricultural University, Tongwei Road 6, Nanjing 210095, PR. China.
Jinggui FangCollege of Horticulture, Nanjing Agricultural University, Tongwei Road 6, Nanjing 210095, PR. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Grapevine is one of the most economically important and widely cultivated fruit crop worldwide. With the industrialization and the popular application of cupric fungicides in grape industry, copper stress and copper pollution are also the factors affecting grape production and berry and wine quality. Here, 3,843 transcripts were significantly differently expressed genes in response to Cu stress by RNA-seq, which included 1,892 up-regulated and 1,951 down-regulated transcripts. During this study we found many known and novel Cu-induced and -repressed genes. Biological analysis of grape samples were indicated that exogenous Cu can influence chlorophylls metabolism and photosynthetic activities of grapevine. Most ROS detoxification systems, including antioxidant enzyme, stress-related proteins and secondary metabolites were strongly induced. Concomitantly, abscisic acid functioned as a negative regulator in Cu stress, in opposite action to ethylene, auxin, jasmonic acid, and brassinolide. This study also identified a set of Cu stress specifically activated genes coding copper transporter, P1B-type ATPase, multidrug transporters. Overall, this work was carried out to gain insights into the copper-regulated and stress-responsive mechanisms in grapevine at transcriptome level. This research can also provide some genetic information that can help us in better vinery management and breeding Cu-resistant grape cultivars.

Indexed as

ChlorophyllCopperGene Expression Regulation, PlantGene OntologyGenes, PlantPhotosynthesisPlant LeavesPlant ProteinsReactive Oxygen SpeciesReverse Transcriptase Polymerase Chain ReactionSignal TransductionTranscriptomeVitisChlorophyllCopperPlant ProteinsReactive Oxygen Species

Identifiers

PMID26673527
PMCPMC4682189

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.